miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28085 3' -51.6 NC_005887.1 + 6574 1.13 0.000933
Target:  5'- gCAUCAACAUCGUGAUCCACCAGCCGCg -3'
miRNA:   3'- -GUAGUUGUAGCACUAGGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 32718 0.79 0.188308
Target:  5'- aCAcCGACAUCGcGAgCCACCGGUCGCg -3'
miRNA:   3'- -GUaGUUGUAGCaCUaGGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 31876 0.78 0.216466
Target:  5'- aGUCGAg--CGUGAUCgCGCCGGCCGUa -3'
miRNA:   3'- gUAGUUguaGCACUAG-GUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 36918 0.77 0.261866
Target:  5'- --cCAGCGggcgCGUGGUCgCGCCGGUCGCu -3'
miRNA:   3'- guaGUUGUa---GCACUAG-GUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 40827 0.75 0.319603
Target:  5'- uCGUCGACAgcagguccggguaCGUGuUCCGCaCGGCCGCg -3'
miRNA:   3'- -GUAGUUGUa------------GCACuAGGUG-GUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 40504 0.75 0.36613
Target:  5'- --gCGACGUCGUGuucggcAUCCACCAcGCgGCg -3'
miRNA:   3'- guaGUUGUAGCAC------UAGGUGGU-CGgCG- -5'
28085 3' -51.6 NC_005887.1 + 583 0.73 0.433039
Target:  5'- aCGUCGGCAcgaccucgaUCGUGGUCUucgACCAGagcCCGCg -3'
miRNA:   3'- -GUAGUUGU---------AGCACUAGG---UGGUC---GGCG- -5'
28085 3' -51.6 NC_005887.1 + 29516 0.72 0.474324
Target:  5'- gGUCAGCAgcugguUCGUGAauUCCGggcUCAGCUGCu -3'
miRNA:   3'- gUAGUUGU------AGCACU--AGGU---GGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 20819 0.72 0.495693
Target:  5'- --gCAGCGUCGUGAauuucCCGgCAGCCGg -3'
miRNA:   3'- guaGUUGUAGCACUa----GGUgGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 7272 0.72 0.50654
Target:  5'- aCcgCGACAUCGg---CC-CCGGCCGCc -3'
miRNA:   3'- -GuaGUUGUAGCacuaGGuGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 22861 0.72 0.50654
Target:  5'- cCAUCGACGg------CCGCCGGCCGCu -3'
miRNA:   3'- -GUAGUUGUagcacuaGGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 24600 0.72 0.50654
Target:  5'- gGUUcGCggCGaUGAUCUugCGGCCGCa -3'
miRNA:   3'- gUAGuUGuaGC-ACUAGGugGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 16384 0.71 0.528527
Target:  5'- gCGUCAAUgcaGUCGaGAcggCCGCCGGCCGg -3'
miRNA:   3'- -GUAGUUG---UAGCaCUa--GGUGGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 25942 0.71 0.562133
Target:  5'- -cUCGGCcgCGUGAgcuUCCgGCCGGCgGCc -3'
miRNA:   3'- guAGUUGuaGCACU---AGG-UGGUCGgCG- -5'
28085 3' -51.6 NC_005887.1 + 10027 0.7 0.589426
Target:  5'- gCAUCGGCGU-GUGGUCCuacgcacugcggcgcGCCGGCUGg -3'
miRNA:   3'- -GUAGUUGUAgCACUAGG---------------UGGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 40838 0.7 0.59629
Target:  5'- gAUCuucguGCAgUCG-GAUCCACCggcgaAGCCGCc -3'
miRNA:   3'- gUAGu----UGU-AGCaCUAGGUGG-----UCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 13987 0.7 0.607755
Target:  5'- cCGUCGACGcguUCGUGcUCgaaGCCAauGCCGCg -3'
miRNA:   3'- -GUAGUUGU---AGCACuAGg--UGGU--CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 22613 0.7 0.630744
Target:  5'- --aCAGCGUCGUGccgccaAUgCACCAGauCCGCg -3'
miRNA:   3'- guaGUUGUAGCAC------UAgGUGGUC--GGCG- -5'
28085 3' -51.6 NC_005887.1 + 28639 0.69 0.653737
Target:  5'- -uUCGGCuugcCGuUGAUCUGCUGGCCGCc -3'
miRNA:   3'- guAGUUGua--GC-ACUAGGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 24357 0.69 0.653737
Target:  5'- cCGUCu-CGUCGgcgacGAaCCACgAGCCGCg -3'
miRNA:   3'- -GUAGuuGUAGCa----CUaGGUGgUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.