miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28085 3' -51.6 NC_005887.1 + 7449 0.66 0.816444
Target:  5'- gCGUgcGCGUCGUGAUCgGCauGCCGUu -3'
miRNA:   3'- -GUAguUGUAGCACUAGgUGguCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 40254 0.68 0.754693
Target:  5'- -uUCGGCAauauguUCGUGcugCCGCUGGCCGg -3'
miRNA:   3'- guAGUUGU------AGCACua-GGUGGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 4298 0.68 0.754693
Target:  5'- gGUCGACAUCcucgccGAggCCgGCCAGCUGCc -3'
miRNA:   3'- gUAGUUGUAGca----CUa-GG-UGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 31477 0.68 0.754693
Target:  5'- uCGUCAGCAcaguUCGUag-UCACCGauuGCCGCg -3'
miRNA:   3'- -GUAGUUGU----AGCAcuaGGUGGU---CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 17641 0.67 0.764337
Target:  5'- gGUCAGCGcCGUGAagCugCAgggcacgauccucGCCGCg -3'
miRNA:   3'- gUAGUUGUaGCACUagGugGU-------------CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 21884 0.67 0.765401
Target:  5'- uCAUCAGCA-CGUGGcCCGCgCGuaucucgcuuGCCGCc -3'
miRNA:   3'- -GUAGUUGUaGCACUaGGUG-GU----------CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 31659 0.67 0.77596
Target:  5'- aGUCAGCAUCGcg--CCAgaAGCCGUu -3'
miRNA:   3'- gUAGUUGUAGCacuaGGUggUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 25641 0.67 0.786356
Target:  5'- gAUguGCAgguUGAgcuucaCCGCCAGCCGCa -3'
miRNA:   3'- gUAguUGUagcACUa-----GGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 25007 0.67 0.796577
Target:  5'- gCGUCAGC-UCGcg--CCGgCGGCCGCc -3'
miRNA:   3'- -GUAGUUGuAGCacuaGGUgGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 24645 0.68 0.754693
Target:  5'- gCGUCAcgGUgGUGAgaaUCCGcuucgacauuguCCAGCCGCg -3'
miRNA:   3'- -GUAGUugUAgCACU---AGGU------------GGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 41517 0.68 0.699365
Target:  5'- aGUCGACGgugcUCGgcaaGAUCCGCgAGgCGCu -3'
miRNA:   3'- gUAGUUGU----AGCa---CUAGGUGgUCgGCG- -5'
28085 3' -51.6 NC_005887.1 + 41168 0.69 0.688034
Target:  5'- gCcgCAAUgguGUCGaacaUGAUCCGCCuGGCUGCa -3'
miRNA:   3'- -GuaGUUG---UAGC----ACUAGGUGG-UCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 7272 0.72 0.50654
Target:  5'- aCcgCGACAUCGg---CC-CCGGCCGCc -3'
miRNA:   3'- -GuaGUUGUAGCacuaGGuGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 22861 0.72 0.50654
Target:  5'- cCAUCGACGg------CCGCCGGCCGCu -3'
miRNA:   3'- -GUAGUUGUagcacuaGGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 24600 0.72 0.50654
Target:  5'- gGUUcGCggCGaUGAUCUugCGGCCGCa -3'
miRNA:   3'- gUAGuUGuaGC-ACUAGGugGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 16384 0.71 0.528527
Target:  5'- gCGUCAAUgcaGUCGaGAcggCCGCCGGCCGg -3'
miRNA:   3'- -GUAGUUG---UAGCaCUa--GGUGGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 40838 0.7 0.59629
Target:  5'- gAUCuucguGCAgUCG-GAUCCACCggcgaAGCCGCc -3'
miRNA:   3'- gUAGu----UGU-AGCaCUAGGUGG-----UCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 12576 0.69 0.653737
Target:  5'- gCAUgcGCAUgGUG-UCCGCCgacccGGCCGCg -3'
miRNA:   3'- -GUAguUGUAgCACuAGGUGG-----UCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 24357 0.69 0.653737
Target:  5'- cCGUCu-CGUCGgcgacGAaCCACgAGCCGCg -3'
miRNA:   3'- -GUAGuuGUAGCa----CUaGGUGgUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 2164 0.69 0.688034
Target:  5'- gAUCGGCAuggacuUCGgccugaCGCCGGCCGCg -3'
miRNA:   3'- gUAGUUGU------AGCacuag-GUGGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.