miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28085 3' -51.6 NC_005887.1 + 522 0.66 0.853554
Target:  5'- gGUCGaucugaacGCGUCGg---CCGCCGcgcGCCGCg -3'
miRNA:   3'- gUAGU--------UGUAGCacuaGGUGGU---CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 583 0.73 0.433039
Target:  5'- aCGUCGGCAcgaccucgaUCGUGGUCUucgACCAGagcCCGCg -3'
miRNA:   3'- -GUAGUUGU---------AGCACUAGG---UGGUC---GGCG- -5'
28085 3' -51.6 NC_005887.1 + 2164 0.69 0.688034
Target:  5'- gAUCGGCAuggacuUCGgccugaCGCCGGCCGCg -3'
miRNA:   3'- gUAGUUGU------AGCacuag-GUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 4298 0.68 0.754693
Target:  5'- gGUCGACAUCcucgccGAggCCgGCCAGCUGCc -3'
miRNA:   3'- gUAGUUGUAGca----CUa-GG-UGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 4449 0.66 0.835466
Target:  5'- -cUCGGCAUCGUcucgcaguucGAcCCGgCuGCCGCg -3'
miRNA:   3'- guAGUUGUAGCA----------CUaGGUgGuCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 6574 1.13 0.000933
Target:  5'- gCAUCAACAUCGUGAUCCACCAGCCGCg -3'
miRNA:   3'- -GUAGUUGUAGCACUAGGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 7272 0.72 0.50654
Target:  5'- aCcgCGACAUCGg---CC-CCGGCCGCc -3'
miRNA:   3'- -GuaGUUGUAGCacuaGGuGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 7449 0.66 0.816444
Target:  5'- gCGUgcGCGUCGUGAUCgGCauGCCGUu -3'
miRNA:   3'- -GUAguUGUAGCACUAGgUGguCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 8176 0.68 0.710625
Target:  5'- aAUCAACGUCGUcGUUUACgGGCCu- -3'
miRNA:   3'- gUAGUUGUAGCAcUAGGUGgUCGGcg -5'
28085 3' -51.6 NC_005887.1 + 9908 0.66 0.826066
Target:  5'- gGUCGGCGgcacgaucauguUCGUGcagaagGCCGGCCGCa -3'
miRNA:   3'- gUAGUUGU------------AGCACuagg--UGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 10027 0.7 0.589426
Target:  5'- gCAUCGGCGU-GUGGUCCuacgcacugcggcgcGCCGGCUGg -3'
miRNA:   3'- -GUAGUUGUAgCACUAGG---------------UGGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 11029 0.68 0.710625
Target:  5'- gGUCGGCA-CGUGGgacgugaCCACCGGUgCGCc -3'
miRNA:   3'- gUAGUUGUaGCACUa------GGUGGUCG-GCG- -5'
28085 3' -51.6 NC_005887.1 + 11721 0.69 0.665207
Target:  5'- gCAUCAACGaucCG-GAUCUGCCGGaCGCg -3'
miRNA:   3'- -GUAGUUGUa--GCaCUAGGUGGUCgGCG- -5'
28085 3' -51.6 NC_005887.1 + 12001 0.67 0.765401
Target:  5'- -cUCGGCAUCG-GggCauugaaaACCGGCUGCg -3'
miRNA:   3'- guAGUUGUAGCaCuaGg------UGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 12576 0.69 0.653737
Target:  5'- gCAUgcGCAUgGUG-UCCGCCgacccGGCCGCg -3'
miRNA:   3'- -GUAguUGUAgCACuAGGUGG-----UCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 12630 0.67 0.800614
Target:  5'- --gCGGCG-CGUGAUCCugCgacgcgacggcgaguGGCUGCg -3'
miRNA:   3'- guaGUUGUaGCACUAGGugG---------------UCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 13305 0.66 0.853554
Target:  5'- gAUCGGCcaggcguUCGgcaa-CGCCGGCCGCa -3'
miRNA:   3'- gUAGUUGu------AGCacuagGUGGUCGGCG- -5'
28085 3' -51.6 NC_005887.1 + 13987 0.7 0.607755
Target:  5'- cCGUCGACGcguUCGUGcUCgaaGCCAauGCCGCg -3'
miRNA:   3'- -GUAGUUGU---AGCACuAGg--UGGU--CGGCG- -5'
28085 3' -51.6 NC_005887.1 + 16384 0.71 0.528527
Target:  5'- gCGUCAAUgcaGUCGaGAcggCCGCCGGCCGg -3'
miRNA:   3'- -GUAGUUG---UAGCaCUa--GGUGGUCGGCg -5'
28085 3' -51.6 NC_005887.1 + 16550 0.66 0.844632
Target:  5'- gCGUCAGCAacUCGUgcacgaagccGAUCUcgACCGGgcCCGCa -3'
miRNA:   3'- -GUAGUUGU--AGCA----------CUAGG--UGGUC--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.