Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28089 | 5' | -51.2 | NC_005887.1 | + | 4757 | 1.14 | 0.000993 |
Target: 5'- cGCGCACUGACGAGAUCCGAAUUCCGCc -3' miRNA: 3'- -CGCGUGACUGCUCUAGGCUUAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40644 | 0.76 | 0.359766 |
Target: 5'- -gGCACUGACGAGcgcgcgCCGAucaccggCCGCa -3' miRNA: 3'- cgCGUGACUGCUCua----GGCUuaa----GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 7962 | 0.75 | 0.377767 |
Target: 5'- cGCGCGCUGACGAaGAUCggcgaaagCGAAUcacgUCGCu -3' miRNA: 3'- -CGCGUGACUGCU-CUAG--------GCUUAa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 26225 | 0.75 | 0.386992 |
Target: 5'- cUGCAgCUGGCGcacGGGUCCGA--UCCGCu -3' miRNA: 3'- cGCGU-GACUGC---UCUAGGCUuaAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 3481 | 0.74 | 0.435275 |
Target: 5'- gGCGCGCUGAUGAucGAgcaCGAcgUCgGCa -3' miRNA: 3'- -CGCGUGACUGCU--CUag-GCUuaAGgCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 8723 | 0.73 | 0.486861 |
Target: 5'- cGCGCGCU-ACGGGAagUUCGAAgaccacgCCGCg -3' miRNA: 3'- -CGCGUGAcUGCUCU--AGGCUUaa-----GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 3955 | 0.73 | 0.497528 |
Target: 5'- aGCGCACUGACc-GAaCCGGAgaUCGCa -3' miRNA: 3'- -CGCGUGACUGcuCUaGGCUUaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 26438 | 0.72 | 0.551166 |
Target: 5'- cGCGCGCUGcagccgcGCGAGAUCCGAcUUgaaGUg -3' miRNA: 3'- -CGCGUGAC-------UGCUCUAGGCUuAAgg-CG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 3341 | 0.71 | 0.59734 |
Target: 5'- aUGCGCUGaACGAGAUCgCG---UCCGUc -3' miRNA: 3'- cGCGUGAC-UGCUCUAG-GCuuaAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 29018 | 0.71 | 0.620098 |
Target: 5'- cUGCGC-GGCGAGAUCCGcGAUgcggCCGg -3' miRNA: 3'- cGCGUGaCUGCUCUAGGC-UUAa---GGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 8866 | 0.7 | 0.676996 |
Target: 5'- gGCGCGCccGuCGAGAUCgCGAcg-CCGUa -3' miRNA: 3'- -CGCGUGa-CuGCUCUAG-GCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 8855 | 0.7 | 0.688286 |
Target: 5'- cGCGCggauGCUGaACGGcGAUCCGGAUuaCGUc -3' miRNA: 3'- -CGCG----UGAC-UGCU-CUAGGCUUAagGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 27861 | 0.7 | 0.688286 |
Target: 5'- uGCGCAgCUuuuCGAGAUugagCCGAAUUUCGUa -3' miRNA: 3'- -CGCGU-GAcu-GCUCUA----GGCUUAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30775 | 0.7 | 0.688286 |
Target: 5'- uGCGCGC-GGCGAGuUCC---UUCUGCg -3' miRNA: 3'- -CGCGUGaCUGCUCuAGGcuuAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40893 | 0.69 | 0.721759 |
Target: 5'- cGCGaCGgUGACGAcGAgccgCCGAAggcuaCCGCg -3' miRNA: 3'- -CGC-GUgACUGCU-CUa---GGCUUaa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 15895 | 0.69 | 0.721759 |
Target: 5'- gGUGCGCUcGACGcgcAGcuggCCGAccugcGUUCCGCg -3' miRNA: 3'- -CGCGUGA-CUGC---UCua--GGCU-----UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 16188 | 0.69 | 0.732742 |
Target: 5'- cGCGCGCgacacgaucGACGAGGacgucgUCGAGcgCCGCg -3' miRNA: 3'- -CGCGUGa--------CUGCUCUa-----GGCUUaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 622 | 0.68 | 0.764991 |
Target: 5'- cGCGCGC---CGGGAUCgGAucgCCGCc -3' miRNA: 3'- -CGCGUGacuGCUCUAGgCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 1495 | 0.68 | 0.795923 |
Target: 5'- cGCGCGC-GGCGgcuucgccgguGGAUCCGA---CUGCa -3' miRNA: 3'- -CGCGUGaCUGC-----------UCUAGGCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40822 | 0.67 | 0.805882 |
Target: 5'- cGCGguCgucGACaGcAGGUCCGGguacguGUUCCGCa -3' miRNA: 3'- -CGCguGa--CUG-C-UCUAGGCU------UAAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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