miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28089 5' -51.2 NC_005887.1 + 622 0.68 0.764991
Target:  5'- cGCGCGC---CGGGAUCgGAucgCCGCc -3'
miRNA:   3'- -CGCGUGacuGCUCUAGgCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 1495 0.68 0.795923
Target:  5'- cGCGCGC-GGCGgcuucgccgguGGAUCCGA---CUGCa -3'
miRNA:   3'- -CGCGUGaCUGC-----------UCUAGGCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 3341 0.71 0.59734
Target:  5'- aUGCGCUGaACGAGAUCgCG---UCCGUc -3'
miRNA:   3'- cGCGUGAC-UGCUCUAG-GCuuaAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 3481 0.74 0.435275
Target:  5'- gGCGCGCUGAUGAucGAgcaCGAcgUCgGCa -3'
miRNA:   3'- -CGCGUGACUGCU--CUag-GCUuaAGgCG- -5'
28089 5' -51.2 NC_005887.1 + 3768 0.66 0.876823
Target:  5'- cGCGUcguacugGCUcGACGAGggCCGcga-CCGCa -3'
miRNA:   3'- -CGCG-------UGA-CUGCUCuaGGCuuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 3955 0.73 0.497528
Target:  5'- aGCGCACUGACc-GAaCCGGAgaUCGCa -3'
miRNA:   3'- -CGCGUGACUGcuCUaGGCUUaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 4757 1.14 0.000993
Target:  5'- cGCGCACUGACGAGAUCCGAAUUCCGCc -3'
miRNA:   3'- -CGCGUGACUGCUCUAGGCUUAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 7198 0.66 0.884682
Target:  5'- cGUGCAgCgUGACGgccgcccguccguGGcgCCGGAUUCCGa -3'
miRNA:   3'- -CGCGU-G-ACUGC-------------UCuaGGCUUAAGGCg -5'
28089 5' -51.2 NC_005887.1 + 7400 0.67 0.838215
Target:  5'- uGCGCACgcccGcCGAG-UUCGAagccggcgacggcaaGUUCCGCu -3'
miRNA:   3'- -CGCGUGa---CuGCUCuAGGCU---------------UAAGGCG- -5'
28089 5' -51.2 NC_005887.1 + 7962 0.75 0.377767
Target:  5'- cGCGCGCUGACGAaGAUCggcgaaagCGAAUcacgUCGCu -3'
miRNA:   3'- -CGCGUGACUGCU-CUAG--------GCUUAa---GGCG- -5'
28089 5' -51.2 NC_005887.1 + 8000 0.66 0.869518
Target:  5'- ----cUUGACGAgGAUUCGAAggCCGCg -3'
miRNA:   3'- cgcguGACUGCU-CUAGGCUUaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 8723 0.73 0.486861
Target:  5'- cGCGCGCU-ACGGGAagUUCGAAgaccacgCCGCg -3'
miRNA:   3'- -CGCGUGAcUGCUCU--AGGCUUaa-----GGCG- -5'
28089 5' -51.2 NC_005887.1 + 8855 0.7 0.688286
Target:  5'- cGCGCggauGCUGaACGGcGAUCCGGAUuaCGUc -3'
miRNA:   3'- -CGCG----UGAC-UGCU-CUAGGCUUAagGCG- -5'
28089 5' -51.2 NC_005887.1 + 8866 0.7 0.676996
Target:  5'- gGCGCGCccGuCGAGAUCgCGAcg-CCGUa -3'
miRNA:   3'- -CGCGUGa-CuGCUCUAG-GCUuaaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 9614 0.66 0.869518
Target:  5'- cGCGCAC--GCGAGcgCCGcgcuaccCCGCc -3'
miRNA:   3'- -CGCGUGacUGCUCuaGGCuuaa---GGCG- -5'
28089 5' -51.2 NC_005887.1 + 12489 0.66 0.892263
Target:  5'- uCGCGCUGAuCGAuucagcgGcgCUGGAU-CCGCa -3'
miRNA:   3'- cGCGUGACU-GCU-------CuaGGCUUAaGGCG- -5'
28089 5' -51.2 NC_005887.1 + 12614 0.67 0.811765
Target:  5'- gGCGUGCUGACGcAGAagcCCGAccagccacugcCCGCa -3'
miRNA:   3'- -CGCGUGACUGC-UCUa--GGCUuaa--------GGCG- -5'
28089 5' -51.2 NC_005887.1 + 14230 0.67 0.815646
Target:  5'- cGCGCugUucGGCGcGGcAUCCGAucuugCCGCc -3'
miRNA:   3'- -CGCGugA--CUGC-UC-UAGGCUuaa--GGCG- -5'
28089 5' -51.2 NC_005887.1 + 15471 0.66 0.877621
Target:  5'- cGCGCACcaaGACGc-GUUCGAGcuggCCGCg -3'
miRNA:   3'- -CGCGUGa--CUGCucUAGGCUUaa--GGCG- -5'
28089 5' -51.2 NC_005887.1 + 15895 0.69 0.721759
Target:  5'- gGUGCGCUcGACGcgcAGcuggCCGAccugcGUUCCGCg -3'
miRNA:   3'- -CGCGUGA-CUGC---UCua--GGCU-----UAAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.