Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28089 | 5' | -51.2 | NC_005887.1 | + | 40893 | 0.69 | 0.721759 |
Target: 5'- cGCGaCGgUGACGAcGAgccgCCGAAggcuaCCGCg -3' miRNA: 3'- -CGC-GUgACUGCU-CUa---GGCUUaa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40822 | 0.67 | 0.805882 |
Target: 5'- cGCGguCgucGACaGcAGGUCCGGguacguGUUCCGCa -3' miRNA: 3'- -CGCguGa--CUG-C-UCUAGGCU------UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40644 | 0.76 | 0.359766 |
Target: 5'- -gGCACUGACGAGcgcgcgCCGAucaccggCCGCa -3' miRNA: 3'- cgCGUGACUGCUCua----GGCUuaa----GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40532 | 0.67 | 0.843653 |
Target: 5'- gGCGCGCggcagcGACGAcGGUCUGGcgcUCgCGCa -3' miRNA: 3'- -CGCGUGa-----CUGCU-CUAGGCUua-AG-GCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 35488 | 0.66 | 0.885453 |
Target: 5'- uGCGCGUUGgccgacgucGCGAGGUCCGAcacgucgauGUUgcagacCCGCg -3' miRNA: 3'- -CGCGUGAC---------UGCUCUAGGCU---------UAA------GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 34652 | 0.66 | 0.86115 |
Target: 5'- gGCGCGCcggcuUGcCGGuuUCCGGAU-CCGCc -3' miRNA: 3'- -CGCGUG-----ACuGCUcuAGGCUUAaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 33420 | 0.67 | 0.834542 |
Target: 5'- gGCGCuCUGcgucGCGcGGAUCgCGAacGUUCCGUc -3' miRNA: 3'- -CGCGuGAC----UGC-UCUAG-GCU--UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30940 | 0.67 | 0.843653 |
Target: 5'- aGCGCGCUcGGCGGuGAUgUCGGcgcCCGCg -3' miRNA: 3'- -CGCGUGA-CUGCU-CUA-GGCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30775 | 0.7 | 0.688286 |
Target: 5'- uGCGCGC-GGCGAGuUCC---UUCUGCg -3' miRNA: 3'- -CGCGUGaCUGCUCuAGGcuuAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30737 | 0.66 | 0.875218 |
Target: 5'- uGCGCACgcucugcaccugcgUGuCGAGcgCCGA--UCCGg -3' miRNA: 3'- -CGCGUG--------------ACuGCUCuaGGCUuaAGGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30157 | 0.66 | 0.893006 |
Target: 5'- cGCgGCGCUGuccuuCGcGGUCUGcauGUUCUGCa -3' miRNA: 3'- -CG-CGUGACu----GCuCUAGGCu--UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 29018 | 0.71 | 0.620098 |
Target: 5'- cUGCGC-GGCGAGAUCCGcGAUgcggCCGg -3' miRNA: 3'- cGCGUGaCUGCUCUAGGC-UUAa---GGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 27861 | 0.7 | 0.688286 |
Target: 5'- uGCGCAgCUuuuCGAGAUugagCCGAAUUUCGUa -3' miRNA: 3'- -CGCGU-GAcu-GCUCUA----GGCUUAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 27735 | 0.66 | 0.869518 |
Target: 5'- aGCGCGCccucGACG-GcgCCGAcggCCGUa -3' miRNA: 3'- -CGCGUGa---CUGCuCuaGGCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 27210 | 0.67 | 0.825203 |
Target: 5'- aGCGC-CUGcAUGGGGUCgGucgggUCCGUg -3' miRNA: 3'- -CGCGuGAC-UGCUCUAGgCuua--AGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 26438 | 0.72 | 0.551166 |
Target: 5'- cGCGCGCUGcagccgcGCGAGAUCCGAcUUgaaGUg -3' miRNA: 3'- -CGCGUGAC-------UGCUCUAGGCUuAAgg-CG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 26225 | 0.75 | 0.386992 |
Target: 5'- cUGCAgCUGGCGcacGGGUCCGA--UCCGCu -3' miRNA: 3'- cGCGU-GACUGC---UCUAGGCUuaAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 23427 | 0.66 | 0.869518 |
Target: 5'- gGC-CGCUG-CGAGAUUCGGugagcgCUGCg -3' miRNA: 3'- -CGcGUGACuGCUCUAGGCUuaa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 17755 | 0.67 | 0.805882 |
Target: 5'- cGCGCgGCUGAUGGcgcccGGUUCGAAggacUUCCGg -3' miRNA: 3'- -CGCG-UGACUGCU-----CUAGGCUU----AAGGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 16188 | 0.69 | 0.732742 |
Target: 5'- cGCGCGCgacacgaucGACGAGGacgucgUCGAGcgCCGCg -3' miRNA: 3'- -CGCGUGa--------CUGCUCUa-----GGCUUaaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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