Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28089 | 5' | -51.2 | NC_005887.1 | + | 12489 | 0.66 | 0.892263 |
Target: 5'- uCGCGCUGAuCGAuucagcgGcgCUGGAU-CCGCa -3' miRNA: 3'- cGCGUGACU-GCU-------CuaGGCUUAaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 12614 | 0.67 | 0.811765 |
Target: 5'- gGCGUGCUGACGcAGAagcCCGAccagccacugcCCGCa -3' miRNA: 3'- -CGCGUGACUGC-UCUa--GGCUuaa--------GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 14230 | 0.67 | 0.815646 |
Target: 5'- cGCGCugUucGGCGcGGcAUCCGAucuugCCGCc -3' miRNA: 3'- -CGCGugA--CUGC-UC-UAGGCUuaa--GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30940 | 0.67 | 0.843653 |
Target: 5'- aGCGCGCUcGGCGGuGAUgUCGGcgcCCGCg -3' miRNA: 3'- -CGCGUGA-CUGCU-CUA-GGCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40532 | 0.67 | 0.843653 |
Target: 5'- gGCGCGCggcagcGACGAcGGUCUGGcgcUCgCGCa -3' miRNA: 3'- -CGCGUGa-----CUGCU-CUAGGCUua-AG-GCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 34652 | 0.66 | 0.86115 |
Target: 5'- gGCGCGCcggcuUGcCGGuuUCCGGAU-CCGCc -3' miRNA: 3'- -CGCGUG-----ACuGCUcuAGGCUUAaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 8000 | 0.66 | 0.869518 |
Target: 5'- ----cUUGACGAgGAUUCGAAggCCGCg -3' miRNA: 3'- cgcguGACUGCU-CUAGGCUUaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 3768 | 0.66 | 0.876823 |
Target: 5'- cGCGUcguacugGCUcGACGAGggCCGcga-CCGCa -3' miRNA: 3'- -CGCG-------UGA-CUGCUCuaGGCuuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 15471 | 0.66 | 0.877621 |
Target: 5'- cGCGCACcaaGACGc-GUUCGAGcuggCCGCg -3' miRNA: 3'- -CGCGUGa--CUGCucUAGGCUUaa--GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 17755 | 0.67 | 0.805882 |
Target: 5'- cGCGCgGCUGAUGGcgcccGGUUCGAAggacUUCCGg -3' miRNA: 3'- -CGCG-UGACUGCU-----CUAGGCUU----AAGGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40893 | 0.69 | 0.721759 |
Target: 5'- cGCGaCGgUGACGAcGAgccgCCGAAggcuaCCGCg -3' miRNA: 3'- -CGC-GUgACUGCU-CUa---GGCUUaa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 15895 | 0.69 | 0.721759 |
Target: 5'- gGUGCGCUcGACGcgcAGcuggCCGAccugcGUUCCGCg -3' miRNA: 3'- -CGCGUGA-CUGC---UCua--GGCU-----UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 7962 | 0.75 | 0.377767 |
Target: 5'- cGCGCGCUGACGAaGAUCggcgaaagCGAAUcacgUCGCu -3' miRNA: 3'- -CGCGUGACUGCU-CUAG--------GCUUAa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 26225 | 0.75 | 0.386992 |
Target: 5'- cUGCAgCUGGCGcacGGGUCCGA--UCCGCu -3' miRNA: 3'- cGCGU-GACUGC---UCUAGGCUuaAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 3481 | 0.74 | 0.435275 |
Target: 5'- gGCGCGCUGAUGAucGAgcaCGAcgUCgGCa -3' miRNA: 3'- -CGCGUGACUGCU--CUag-GCUuaAGgCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 26438 | 0.72 | 0.551166 |
Target: 5'- cGCGCGCUGcagccgcGCGAGAUCCGAcUUgaaGUg -3' miRNA: 3'- -CGCGUGAC-------UGCUCUAGGCUuAAgg-CG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 3341 | 0.71 | 0.59734 |
Target: 5'- aUGCGCUGaACGAGAUCgCG---UCCGUc -3' miRNA: 3'- cGCGUGAC-UGCUCUAG-GCuuaAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 8866 | 0.7 | 0.676996 |
Target: 5'- gGCGCGCccGuCGAGAUCgCGAcg-CCGUa -3' miRNA: 3'- -CGCGUGa-CuGCUCUAG-GCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 27861 | 0.7 | 0.688286 |
Target: 5'- uGCGCAgCUuuuCGAGAUugagCCGAAUUUCGUa -3' miRNA: 3'- -CGCGU-GAcu-GCUCUA----GGCUUAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30775 | 0.7 | 0.688286 |
Target: 5'- uGCGCGC-GGCGAGuUCC---UUCUGCg -3' miRNA: 3'- -CGCGUGaCUGCUCuAGGcuuAAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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