Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28089 | 5' | -51.2 | NC_005887.1 | + | 30157 | 0.66 | 0.893006 |
Target: 5'- cGCgGCGCUGuccuuCGcGGUCUGcauGUUCUGCa -3' miRNA: 3'- -CG-CGUGACu----GCuCUAGGCu--UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 1495 | 0.68 | 0.795923 |
Target: 5'- cGCGCGC-GGCGgcuucgccgguGGAUCCGA---CUGCa -3' miRNA: 3'- -CGCGUGaCUGC-----------UCUAGGCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 33420 | 0.67 | 0.834542 |
Target: 5'- gGCGCuCUGcgucGCGcGGAUCgCGAacGUUCCGUc -3' miRNA: 3'- -CGCGuGAC----UGC-UCUAG-GCU--UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 7400 | 0.67 | 0.838215 |
Target: 5'- uGCGCACgcccGcCGAG-UUCGAagccggcgacggcaaGUUCCGCu -3' miRNA: 3'- -CGCGUGa---CuGCUCuAGGCU---------------UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 27735 | 0.66 | 0.869518 |
Target: 5'- aGCGCGCccucGACG-GcgCCGAcggCCGUa -3' miRNA: 3'- -CGCGUGa---CUGCuCuaGGCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 9614 | 0.66 | 0.869518 |
Target: 5'- cGCGCAC--GCGAGcgCCGcgcuaccCCGCc -3' miRNA: 3'- -CGCGUGacUGCUCuaGGCuuaa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 8723 | 0.73 | 0.486861 |
Target: 5'- cGCGCGCU-ACGGGAagUUCGAAgaccacgCCGCg -3' miRNA: 3'- -CGCGUGAcUGCUCU--AGGCUUaa-----GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 3955 | 0.73 | 0.497528 |
Target: 5'- aGCGCACUGACc-GAaCCGGAgaUCGCa -3' miRNA: 3'- -CGCGUGACUGcuCUaGGCUUaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 16188 | 0.69 | 0.732742 |
Target: 5'- cGCGCGCgacacgaucGACGAGGacgucgUCGAGcgCCGCg -3' miRNA: 3'- -CGCGUGa--------CUGCUCUa-----GGCUUaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 40822 | 0.67 | 0.805882 |
Target: 5'- cGCGguCgucGACaGcAGGUCCGGguacguGUUCCGCa -3' miRNA: 3'- -CGCguGa--CUG-C-UCUAGGCU------UAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 23427 | 0.66 | 0.869518 |
Target: 5'- gGC-CGCUG-CGAGAUUCGGugagcgCUGCg -3' miRNA: 3'- -CGcGUGACuGCUCUAGGCUuaa---GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 35488 | 0.66 | 0.885453 |
Target: 5'- uGCGCGUUGgccgacgucGCGAGGUCCGAcacgucgauGUUgcagacCCGCg -3' miRNA: 3'- -CGCGUGAC---------UGCUCUAGGCU---------UAA------GGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 8855 | 0.7 | 0.688286 |
Target: 5'- cGCGCggauGCUGaACGGcGAUCCGGAUuaCGUc -3' miRNA: 3'- -CGCG----UGAC-UGCU-CUAGGCUUAagGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 7198 | 0.66 | 0.884682 |
Target: 5'- cGUGCAgCgUGACGgccgcccguccguGGcgCCGGAUUCCGa -3' miRNA: 3'- -CGCGU-G-ACUGC-------------UCuaGGCUUAAGGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 27210 | 0.67 | 0.825203 |
Target: 5'- aGCGC-CUGcAUGGGGUCgGucgggUCCGUg -3' miRNA: 3'- -CGCGuGAC-UGCUCUAGgCuua--AGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 29018 | 0.71 | 0.620098 |
Target: 5'- cUGCGC-GGCGAGAUCCGcGAUgcggCCGg -3' miRNA: 3'- cGCGUGaCUGCUCUAGGC-UUAa---GGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 4757 | 1.14 | 0.000993 |
Target: 5'- cGCGCACUGACGAGAUCCGAAUUCCGCc -3' miRNA: 3'- -CGCGUGACUGCUCUAGGCUUAAGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30737 | 0.66 | 0.875218 |
Target: 5'- uGCGCACgcucugcaccugcgUGuCGAGcgCCGA--UCCGg -3' miRNA: 3'- -CGCGUG--------------ACuGCUCuaGGCUuaAGGCg -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 622 | 0.68 | 0.764991 |
Target: 5'- cGCGCGC---CGGGAUCgGAucgCCGCc -3' miRNA: 3'- -CGCGUGacuGCUCUAGgCUuaaGGCG- -5' |
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28089 | 5' | -51.2 | NC_005887.1 | + | 30940 | 0.67 | 0.843653 |
Target: 5'- aGCGCGCUcGGCGGuGAUgUCGGcgcCCGCg -3' miRNA: 3'- -CGCGUGA-CUGCU-CUA-GGCUuaaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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