miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 18004 0.71 0.263851
Target:  5'- aGCCUGACcgaauggGACCGcCGCgCGCuUACGcGCg -3'
miRNA:   3'- gCGGAUUG-------UUGGC-GCGgGCG-AUGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 17028 0.71 0.264526
Target:  5'- uGCUUGGCAACggaucggaUGCGCagcggcaCGCUugGGCg -3'
miRNA:   3'- gCGGAUUGUUG--------GCGCGg------GCGAugCCG- -5'
28090 5' -57.5 NC_005887.1 + 16810 0.71 0.264526
Target:  5'- aGCU--ACGAaCGCGCaCCGCUcgGCGGCg -3'
miRNA:   3'- gCGGauUGUUgGCGCG-GGCGA--UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2926 0.71 0.264526
Target:  5'- cCGCCgccaAGCUGCGCaagCGCcGCGGCa -3'
miRNA:   3'- -GCGGauugUUGGCGCGg--GCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 27483 0.71 0.271356
Target:  5'- uGCCgcGCgGugCGCGCUguUGCUGCGGUg -3'
miRNA:   3'- gCGGauUG-UugGCGCGG--GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14014 0.71 0.278327
Target:  5'- gCGCCUccGCAACCGCcgGCgCGCcgcCGGCg -3'
miRNA:   3'- -GCGGAu-UGUUGGCG--CGgGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 19112 0.71 0.278327
Target:  5'- gCGCC-GACcGCCGcCGCUCGCgugccguCGGCg -3'
miRNA:   3'- -GCGGaUUGuUGGC-GCGGGCGau-----GCCG- -5'
28090 5' -57.5 NC_005887.1 + 10667 0.71 0.278327
Target:  5'- uGCCgacgAAcCAGCCG-GCCCGgCUaACGGCu -3'
miRNA:   3'- gCGGa---UU-GUUGGCgCGGGC-GA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 9231 0.71 0.28544
Target:  5'- gGuCCUAGCgAACUGCGCCgCGU--CGGCg -3'
miRNA:   3'- gC-GGAUUG-UUGGCGCGG-GCGauGCCG- -5'
28090 5' -57.5 NC_005887.1 + 14682 0.71 0.28544
Target:  5'- uGCCccgcACGAUCGgGCUCGUcGCGGCg -3'
miRNA:   3'- gCGGau--UGUUGGCgCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40911 0.71 0.28544
Target:  5'- cCGCCgaaGGCuACCGCGCgCGCaccgaguuCGGCa -3'
miRNA:   3'- -GCGGa--UUGuUGGCGCGgGCGau------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 14981 0.7 0.292695
Target:  5'- aCGCCgcGCAgGCCGCGCaggCCGCa--GGCg -3'
miRNA:   3'- -GCGGauUGU-UGGCGCG---GGCGaugCCG- -5'
28090 5' -57.5 NC_005887.1 + 12591 0.7 0.292695
Target:  5'- cCGCCgaccCGGCCGCGa-CGCU-CGGCg -3'
miRNA:   3'- -GCGGauu-GUUGGCGCggGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 31677 0.7 0.292695
Target:  5'- aGCCgu-UAGCCGgGCCgGCUGguucguCGGCa -3'
miRNA:   3'- gCGGauuGUUGGCgCGGgCGAU------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 31440 0.7 0.292695
Target:  5'- gGCCggccGACGucauCUGCGCCgGCUGCaGGUg -3'
miRNA:   3'- gCGGa---UUGUu---GGCGCGGgCGAUG-CCG- -5'
28090 5' -57.5 NC_005887.1 + 3612 0.7 0.292695
Target:  5'- gCGCCa---GGCCGCGCagCGCUuCGGCc -3'
miRNA:   3'- -GCGGauugUUGGCGCGg-GCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 12042 0.7 0.292695
Target:  5'- cCGUCgaaGACAACacagGCGCCgCGCUGCaGCa -3'
miRNA:   3'- -GCGGa--UUGUUGg---CGCGG-GCGAUGcCG- -5'
28090 5' -57.5 NC_005887.1 + 2432 0.7 0.307637
Target:  5'- gCGCCgacgaaUGAC-ACCuCGCUgCGCUACGGCg -3'
miRNA:   3'- -GCGG------AUUGuUGGcGCGG-GCGAUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 15510 0.7 0.307637
Target:  5'- aCGgCUAccgGCAGaCGCGCCCGCU-CGcGCa -3'
miRNA:   3'- -GCgGAU---UGUUgGCGCGGGCGAuGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 30204 0.7 0.307637
Target:  5'- uCGCCggcCAGCCaCGCCgCGUcGCGGCc -3'
miRNA:   3'- -GCGGauuGUUGGcGCGG-GCGaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.