miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 24724 0.76 0.340164
Target:  5'- cGGCGCUGACCGucguGCGCAgcguuuccaucuugcGCGCGAgcgcGGGa -3'
miRNA:   3'- cUCGUGACUGGU----UGCGU---------------UGUGCU----UCC- -5'
28091 5' -50.9 NC_005887.1 + 23656 0.66 0.858831
Target:  5'- -cGCGCUGAuugucggagauaauCCGGCGCG-CGCGAAc- -3'
miRNA:   3'- cuCGUGACU--------------GGUUGCGUuGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 22982 0.66 0.855335
Target:  5'- cGAGCauggcgcguugccGCUGAUCGACGCcggucgcuucugcgaGGCggugGCGAAGGu -3'
miRNA:   3'- -CUCG-------------UGACUGGUUGCG---------------UUG----UGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 21023 0.68 0.774496
Target:  5'- -cGUACcGGCCGAUGCGgucgGCGCGguGGg -3'
miRNA:   3'- cuCGUGaCUGGUUGCGU----UGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 20739 0.67 0.804373
Target:  5'- cAGCAUuuuuccgUGACCAAUGC-ACGCGccGGc -3'
miRNA:   3'- cUCGUG-------ACUGGUUGCGuUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 18952 0.71 0.593752
Target:  5'- -cGCGCUGcugcggcuGCCAGCgGCAGCGCGAGc- -3'
miRNA:   3'- cuCGUGAC--------UGGUUG-CGUUGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 18787 0.66 0.852686
Target:  5'- -cGCACUG-CCGGCcgGCGAUGCGGGcGGc -3'
miRNA:   3'- cuCGUGACuGGUUG--CGUUGUGCUU-CC- -5'
28091 5' -50.9 NC_005887.1 + 18434 0.69 0.68598
Target:  5'- cGA-CGCUGAUCGGCGCGAUcucgacgcagGCGAAGa -3'
miRNA:   3'- -CUcGUGACUGGUUGCGUUG----------UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 18237 0.69 0.68598
Target:  5'- -cGCAC-GACacGCGCAGCACGGccaAGGg -3'
miRNA:   3'- cuCGUGaCUGguUGCGUUGUGCU---UCC- -5'
28091 5' -50.9 NC_005887.1 + 17746 0.66 0.853572
Target:  5'- cGGCAC-GGCC-GCGCGGCugauggcgcccgguuCGAAGGa -3'
miRNA:   3'- cUCGUGaCUGGuUGCGUUGu--------------GCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 17446 0.74 0.43004
Target:  5'- cGAGCGCUacGGCCcgaauccgacGCGCAACAUGAAGa -3'
miRNA:   3'- -CUCGUGA--CUGGu---------UGCGUUGUGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 16768 0.71 0.616813
Target:  5'- uGGGCGC-GAUCGACGCG--AUGAAGGu -3'
miRNA:   3'- -CUCGUGaCUGGUUGCGUugUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 16678 0.66 0.843693
Target:  5'- --cCACUGACCGACgaugGCGACGCGcugcGGc -3'
miRNA:   3'- cucGUGACUGGUUG----CGUUGUGCuu--CC- -5'
28091 5' -50.9 NC_005887.1 + 16468 0.66 0.852686
Target:  5'- -uGCGCUcGACC-GCGCGGCAgGAuccGGc -3'
miRNA:   3'- cuCGUGA-CUGGuUGCGUUGUgCUu--CC- -5'
28091 5' -50.9 NC_005887.1 + 15835 0.7 0.628371
Target:  5'- cAGCGCUuGCgCGGCGCGAU-CGAGGGa -3'
miRNA:   3'- cUCGUGAcUG-GUUGCGUUGuGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 15331 0.73 0.503679
Target:  5'- -cGCGCUcGCCGagguuGCGC-ACACGAAGGu -3'
miRNA:   3'- cuCGUGAcUGGU-----UGCGuUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 14313 0.67 0.804373
Target:  5'- aAGCGCaGGCCGACGCcgacaagcaggugAACGCGgcGa -3'
miRNA:   3'- cUCGUGaCUGGUUGCG-------------UUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 14195 0.66 0.886023
Target:  5'- -cGCGCUGuCgGGCGCGGCcuCGGacAGGg -3'
miRNA:   3'- cuCGUGACuGgUUGCGUUGu-GCU--UCC- -5'
28091 5' -50.9 NC_005887.1 + 14030 0.66 0.861425
Target:  5'- cGGCGCgccGCCGGCGCAGCcugagACGAugccguucccGGGa -3'
miRNA:   3'- cUCGUGac-UGGUUGCGUUG-----UGCU----------UCC- -5'
28091 5' -50.9 NC_005887.1 + 13572 0.73 0.460857
Target:  5'- cGAGCA--GGCCGACG--ACGCGAAGGa -3'
miRNA:   3'- -CUCGUgaCUGGUUGCguUGUGCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.