Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28091 | 5' | -50.9 | NC_005887.1 | + | 3046 | 0.68 | 0.753077 |
Target: 5'- cGGCcaaUGACgAACGaCGACGCGAAGa -3' miRNA: 3'- cUCGug-ACUGgUUGC-GUUGUGCUUCc -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 13452 | 0.68 | 0.753077 |
Target: 5'- cAGCACguucauccUGACgGGCGCGcagGCGCuGAAGGa -3' miRNA: 3'- cUCGUG--------ACUGgUUGCGU---UGUG-CUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 27784 | 0.72 | 0.536893 |
Target: 5'- aGAGCGCcaUGacgacggcGCCGACGCAG-GCGAGGGa -3' miRNA: 3'- -CUCGUG--AC--------UGGUUGCGUUgUGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 40157 | 0.73 | 0.503679 |
Target: 5'- -cGCGCUcGCCGcgugugagcuGCGCGacgGCACGAAGGg -3' miRNA: 3'- cuCGUGAcUGGU----------UGCGU---UGUGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 4667 | 0.73 | 0.503679 |
Target: 5'- -cGCGCaGACCGcuGCGCAGacgGCGAGGGu -3' miRNA: 3'- cuCGUGaCUGGU--UGCGUUg--UGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 3080 | 0.73 | 0.482038 |
Target: 5'- aGGCGCUGaacGCCGACcacgGCcGCAUGAAGGa -3' miRNA: 3'- cUCGUGAC---UGGUUG----CGuUGUGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 13572 | 0.73 | 0.460857 |
Target: 5'- cGAGCA--GGCCGACG--ACGCGAAGGa -3' miRNA: 3'- -CUCGUgaCUGGUUGCguUGUGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 24954 | 0.74 | 0.43004 |
Target: 5'- -cGCGCgGGCCGccuugcGCGCGGcCGCGAGGGa -3' miRNA: 3'- cuCGUGaCUGGU------UGCGUU-GUGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 17446 | 0.74 | 0.43004 |
Target: 5'- cGAGCGCUacGGCCcgaauccgacGCGCAACAUGAAGa -3' miRNA: 3'- -CUCGUGA--CUGGu---------UGCGUUGUGCUUCc -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 37002 | 0.74 | 0.420039 |
Target: 5'- cGAGCACgcgcaGGCCGuACGCgAACACGucGGg -3' miRNA: 3'- -CUCGUGa----CUGGU-UGCG-UUGUGCuuCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 13386 | 0.71 | 0.593752 |
Target: 5'- -cGCGCUGaagGCCGGCGCGGCggACGucGGc -3' miRNA: 3'- cuCGUGAC---UGGUUGCGUUG--UGCuuCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 16768 | 0.71 | 0.616813 |
Target: 5'- uGGGCGC-GAUCGACGCG--AUGAAGGu -3' miRNA: 3'- -CUCGUGaCUGGUUGCGUugUGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 26341 | 0.69 | 0.731113 |
Target: 5'- cGGCGCUGGCCGgguGCGCgAACAUcaccGGGa -3' miRNA: 3'- cUCGUGACUGGU---UGCG-UUGUGcu--UCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 41608 | 0.69 | 0.708712 |
Target: 5'- aGGUGCggcGGCCGGCGCGGCcCGuGAGGa -3' miRNA: 3'- cUCGUGa--CUGGUUGCGUUGuGC-UUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 6419 | 0.69 | 0.707583 |
Target: 5'- aGGCGCUGGCCGAUcugaacgGCAACACcgcGGc -3' miRNA: 3'- cUCGUGACUGGUUG-------CGUUGUGcuuCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 11395 | 0.69 | 0.697381 |
Target: 5'- gGAGCGCUGgcgGCCGGCGC--CGCcAAGGc -3' miRNA: 3'- -CUCGUGAC---UGGUUGCGuuGUGcUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 12490 | 0.69 | 0.696244 |
Target: 5'- -cGCGCUGAUCGAUucaGCGGCgcuggauccgcagACGAAGGc -3' miRNA: 3'- cuCGUGACUGGUUG---CGUUG-------------UGCUUCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 18434 | 0.69 | 0.68598 |
Target: 5'- cGA-CGCUGAUCGGCGCGAUcucgacgcagGCGAAGa -3' miRNA: 3'- -CUcGUGACUGGUUGCGUUG----------UGCUUCc -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 33378 | 0.7 | 0.66302 |
Target: 5'- -uGCACgcGCCGGCGCGGCAgGAugAGGc -3' miRNA: 3'- cuCGUGacUGGUUGCGUUGUgCU--UCC- -5' |
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28091 | 5' | -50.9 | NC_005887.1 | + | 15835 | 0.7 | 0.628371 |
Target: 5'- cAGCGCUuGCgCGGCGCGAU-CGAGGGa -3' miRNA: 3'- cUCGUGAcUG-GUUGCGUUGuGCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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