miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28091 5' -50.9 NC_005887.1 + 3957 0.68 0.774496
Target:  5'- -cGCACUGACCGAaccggagauCGCAAUgugcaacgaacgACGgcGGa -3'
miRNA:   3'- cuCGUGACUGGUU---------GCGUUG------------UGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 12953 0.66 0.869899
Target:  5'- cGAGC-CUGAUCGcgaccGCGCcGCAUGGgccgAGGg -3'
miRNA:   3'- -CUCGuGACUGGU-----UGCGuUGUGCU----UCC- -5'
28091 5' -50.9 NC_005887.1 + 41805 0.75 0.400466
Target:  5'- -cGCGCUGuauCCGGCGCGgcGCGCGgcGGc -3'
miRNA:   3'- cuCGUGACu--GGUUGCGU--UGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 18952 0.71 0.593752
Target:  5'- -cGCGCUGcugcggcuGCCAGCgGCAGCGCGAGc- -3'
miRNA:   3'- cuCGUGAC--------UGGUUG-CGUUGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 8385 0.68 0.763861
Target:  5'- cGGUGCUGACgGACGCcgcACGCGAc-- -3'
miRNA:   3'- cUCGUGACUGgUUGCGu--UGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 12057 0.66 0.878101
Target:  5'- cGGC-CUGACUGcgaacgucguGCGCGGCACGAu-- -3'
miRNA:   3'- cUCGuGACUGGU----------UGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 4115 0.7 0.63762
Target:  5'- cGAGCGCUcGACCAucccggccacGCGCAaggcugcGCGCGAcuggcucGGGu -3'
miRNA:   3'- -CUCGUGA-CUGGU----------UGCGU-------UGUGCU-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 12631 0.66 0.886023
Target:  5'- cGGCGCgUGAUCcugcGACGCGACgGCGAGuGGc -3'
miRNA:   3'- cUCGUG-ACUGG----UUGCGUUG-UGCUU-CC- -5'
28091 5' -50.9 NC_005887.1 + 29661 0.66 0.886023
Target:  5'- -cGCGCgUGACCc-UGCAACGCGAu-- -3'
miRNA:   3'- cuCGUG-ACUGGuuGCGUUGUGCUucc -5'
28091 5' -50.9 NC_005887.1 + 6838 0.67 0.805376
Target:  5'- aAGCGCUuGCCGACGauauuuACACGcAGGc -3'
miRNA:   3'- cUCGUGAcUGGUUGCgu----UGUGCuUCC- -5'
28091 5' -50.9 NC_005887.1 + 37486 0.68 0.753077
Target:  5'- cGAGCg--GAUCGaucguGCGCuGCACGggGGa -3'
miRNA:   3'- -CUCGugaCUGGU-----UGCGuUGUGCuuCC- -5'
28091 5' -50.9 NC_005887.1 + 4275 1.12 0.001187
Target:  5'- cGAGCACUGACCAACGCAACACGAAGGg -3'
miRNA:   3'- -CUCGUGACUGGUUGCGUUGUGCUUCC- -5'
28091 5' -50.9 NC_005887.1 + 9210 0.69 0.68598
Target:  5'- cGGCACgGucggcugcuucuACCGACGCAACgGCGAGGa -3'
miRNA:   3'- cUCGUGaC------------UGGUUGCGUUG-UGCUUCc -5'
28091 5' -50.9 NC_005887.1 + 12561 0.71 0.570835
Target:  5'- cAGCuACUGGCCcgagcuGCGCGACGCGgcGa -3'
miRNA:   3'- cUCG-UGACUGGu-----UGCGUUGUGCuuCc -5'
28091 5' -50.9 NC_005887.1 + 26410 0.72 0.513555
Target:  5'- cGGCGCgUGGCCGGCGCAucgauuccggcccGCGCGGAa- -3'
miRNA:   3'- cUCGUG-ACUGGUUGCGU-------------UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 24724 0.76 0.340164
Target:  5'- cGGCGCUGACCGucguGCGCAgcguuuccaucuugcGCGCGAgcgcGGGa -3'
miRNA:   3'- cUCGUGACUGGU----UGCGU---------------UGUGCU----UCC- -5'
28091 5' -50.9 NC_005887.1 + 9601 0.68 0.784969
Target:  5'- uGGCGCgcGCCGGCGCGcACGCGAGc- -3'
miRNA:   3'- cUCGUGacUGGUUGCGU-UGUGCUUcc -5'
28091 5' -50.9 NC_005887.1 + 4951 0.66 0.861425
Target:  5'- aGGCAgUcgcGACC-GCGCAGCGCcagcuGAAGGa -3'
miRNA:   3'- cUCGUgA---CUGGuUGCGUUGUG-----CUUCC- -5'
28091 5' -50.9 NC_005887.1 + 26967 0.67 0.833518
Target:  5'- -cGCGC-GAUCAGCGCGGCGuCGAccugcucGGGc -3'
miRNA:   3'- cuCGUGaCUGGUUGCGUUGU-GCU-------UCC- -5'
28091 5' -50.9 NC_005887.1 + 1233 0.67 0.834455
Target:  5'- cGGGCGCUG-CgCGGCGCucagcACGCGAAa- -3'
miRNA:   3'- -CUCGUGACuG-GUUGCGu----UGUGCUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.