Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28093 | 5' | -52.3 | NC_005887.1 | + | 8551 | 0.66 | 0.816044 |
Target: 5'- ---cGCGUGGUGGC-CGug--GGUCCg -3' miRNA: 3'- cugaCGCGCCACCGuGCuuugUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 5902 | 0.66 | 0.816044 |
Target: 5'- cGCUGCG-GGcUGGC-CGAAggGCAAgaagCCg -3' miRNA: 3'- cUGACGCgCC-ACCGuGCUU--UGUUa---GG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 30997 | 0.66 | 0.806245 |
Target: 5'- gGGgUGCGUcucucGcGUGGCGCGgcGCAggCCa -3' miRNA: 3'- -CUgACGCG-----C-CACCGUGCuuUGUuaGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 5607 | 0.66 | 0.806245 |
Target: 5'- uGCcGCGCGGcaucGGCACGAuuAACAucguUUCg -3' miRNA: 3'- cUGaCGCGCCa---CCGUGCU--UUGUu---AGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 10026 | 0.66 | 0.796249 |
Target: 5'- ---cGCGCGGccgcgcUGGCACGAAcaGCGgcAUCa -3' miRNA: 3'- cugaCGCGCC------ACCGUGCUU--UGU--UAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 4399 | 0.66 | 0.796249 |
Target: 5'- aGGCaaUGCGCGccGGCgaagGCGcgGCGAUCCu -3' miRNA: 3'- -CUG--ACGCGCcaCCG----UGCuuUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 23455 | 0.66 | 0.775712 |
Target: 5'- gGGCUGC-CGGUgccgGGCGaccaGAAAUAAUCg -3' miRNA: 3'- -CUGACGcGCCA----CCGUg---CUUUGUUAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 26424 | 0.67 | 0.754532 |
Target: 5'- cGGCcGCGCGGgaacGCGCGcuGCAG-CCg -3' miRNA: 3'- -CUGaCGCGCCac--CGUGCuuUGUUaGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 35486 | 0.67 | 0.743732 |
Target: 5'- -cCUGCGCGuUGGCcgACGucGCGagGUCCg -3' miRNA: 3'- cuGACGCGCcACCG--UGCuuUGU--UAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 17982 | 0.67 | 0.743732 |
Target: 5'- uGCaGCGCGGcucgUGGUucgucgccgACGAGACGGUCa -3' miRNA: 3'- cUGaCGCGCC----ACCG---------UGCUUUGUUAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 1492 | 0.67 | 0.743732 |
Target: 5'- cGACgcGCGCGGcGGCuuCGccGGugGAUCCg -3' miRNA: 3'- -CUGa-CGCGCCaCCGu-GC--UUugUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 36308 | 0.67 | 0.742645 |
Target: 5'- cGAuCUGCGCGGcGGUcgacgccGCGcacuCGAUCCa -3' miRNA: 3'- -CU-GACGCGCCaCCG-------UGCuuu-GUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 15015 | 0.67 | 0.732811 |
Target: 5'- cGCUGCGC-GUGGCGCagucGACGuggCCg -3' miRNA: 3'- cUGACGCGcCACCGUGcu--UUGUua-GG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 35120 | 0.67 | 0.732811 |
Target: 5'- ---aGgGCGG-GGCGCGGAucGgAAUCCg -3' miRNA: 3'- cugaCgCGCCaCCGUGCUU--UgUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 11096 | 0.67 | 0.731712 |
Target: 5'- cGCgugGCGCaucggcuGGUGcGCGCGAAGCuggCCg -3' miRNA: 3'- cUGa--CGCG-------CCAC-CGUGCUUUGuuaGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 4625 | 0.67 | 0.72178 |
Target: 5'- cGCgGCGcCGGUGGCcgcCGgcGCGAUCa -3' miRNA: 3'- cUGaCGC-GCCACCGu--GCuuUGUUAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 8407 | 0.68 | 0.715114 |
Target: 5'- aGGC-GCGUGGgccGaGCACGAccaggcuaucgccgcAGCGAUCCg -3' miRNA: 3'- -CUGaCGCGCCa--C-CGUGCU---------------UUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 30631 | 0.68 | 0.710653 |
Target: 5'- --gUGCGCGccGUGcGCgcgGCGAAGCGAUCUu -3' miRNA: 3'- cugACGCGC--CAC-CG---UGCUUUGUUAGG- -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 24109 | 0.68 | 0.710653 |
Target: 5'- uGACgGUGCccggcGUGGC-CGAGGCGAUCa -3' miRNA: 3'- -CUGaCGCGc----CACCGuGCUUUGUUAGg -5' |
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28093 | 5' | -52.3 | NC_005887.1 | + | 34388 | 0.68 | 0.688161 |
Target: 5'- ---aGUGCGGccgGGCGCGAGGCccggCCu -3' miRNA: 3'- cugaCGCGCCa--CCGUGCUUUGuua-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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