miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28095 5' -54.6 NC_005887.1 + 42080 0.66 0.699742
Target:  5'- -aCGAGcgcuGUCGcguGGgGCGCGAUGcCGCGu -3'
miRNA:   3'- uaGCUC----UAGCu--CUgUGCGCUAC-GCGC- -5'
28095 5' -54.6 NC_005887.1 + 35430 0.66 0.699742
Target:  5'- aGUCGAucaGGUCGAgcGACGCGUaGAUGaCGCc -3'
miRNA:   3'- -UAGCU---CUAGCU--CUGUGCG-CUAC-GCGc -5'
28095 5' -54.6 NC_005887.1 + 24933 0.66 0.688656
Target:  5'- cGUUGucGAUCGcGACGCGUGc-GCGCGg -3'
miRNA:   3'- -UAGCu-CUAGCuCUGUGCGCuaCGCGC- -5'
28095 5' -54.6 NC_005887.1 + 5748 0.66 0.666326
Target:  5'- -cCGGGAUuccggcCGAGGC-CGCGAagGCGCu -3'
miRNA:   3'- uaGCUCUA------GCUCUGuGCGCUa-CGCGc -5'
28095 5' -54.6 NC_005887.1 + 14927 0.66 0.666326
Target:  5'- cUCGcGAUCGAcGCACGCc--GCGCGc -3'
miRNA:   3'- uAGCuCUAGCUcUGUGCGcuaCGCGC- -5'
28095 5' -54.6 NC_005887.1 + 36221 0.66 0.666326
Target:  5'- cGUCGAGcacgcuuUCGAGGCACcacuucgccaGCucGUGCGCGg -3'
miRNA:   3'- -UAGCUCu------AGCUCUGUG----------CGc-UACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 35116 0.66 0.655105
Target:  5'- uUCGAGggCGGGGCGCG-GAUcggaauccgGCGCc -3'
miRNA:   3'- uAGCUCuaGCUCUGUGCgCUA---------CGCGc -5'
28095 5' -54.6 NC_005887.1 + 26947 0.66 0.655105
Target:  5'- cGUCGAcGAUCcgcugcccGCGCGCGAUcaGCGCGg -3'
miRNA:   3'- -UAGCU-CUAGcuc-----UGUGCGCUA--CGCGC- -5'
28095 5' -54.6 NC_005887.1 + 17155 0.66 0.655105
Target:  5'- gGUCGgcgaAGAUCGcGAgGCGUGGgagcGCGCGa -3'
miRNA:   3'- -UAGC----UCUAGCuCUgUGCGCUa---CGCGC- -5'
28095 5' -54.6 NC_005887.1 + 38166 0.66 0.655105
Target:  5'- -cCGAGcgCGAaAUAgGCGGUGUGCa -3'
miRNA:   3'- uaGCUCuaGCUcUGUgCGCUACGCGc -5'
28095 5' -54.6 NC_005887.1 + 974 0.67 0.637109
Target:  5'- -aCGAGGugaUCGccGACACGCGcaauugccggccgccGUGCGCGc -3'
miRNA:   3'- uaGCUCU---AGCu-CUGUGCGC---------------UACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 40793 0.67 0.621352
Target:  5'- gGUCGAGGuUCGuGGCG-GCGAcGCGCc -3'
miRNA:   3'- -UAGCUCU-AGCuCUGUgCGCUaCGCGc -5'
28095 5' -54.6 NC_005887.1 + 9884 0.67 0.598881
Target:  5'- -aCGAGAUCGAuccGCACGCc--GCGCa -3'
miRNA:   3'- uaGCUCUAGCUc--UGUGCGcuaCGCGc -5'
28095 5' -54.6 NC_005887.1 + 14738 0.68 0.565421
Target:  5'- -gCGAcGAUCGAGAaa-GCGAuucUGCGCa -3'
miRNA:   3'- uaGCU-CUAGCUCUgugCGCU---ACGCGc -5'
28095 5' -54.6 NC_005887.1 + 6448 0.68 0.563206
Target:  5'- -cCGAGAUCGAagUGCGCGAccugaaguacggGCGCGg -3'
miRNA:   3'- uaGCUCUAGCUcuGUGCGCUa-----------CGCGC- -5'
28095 5' -54.6 NC_005887.1 + 30442 0.68 0.558782
Target:  5'- cGUCGGGG-CGGGGCAuguUgccgggcuggaacagGCGGUGCGCGa -3'
miRNA:   3'- -UAGCUCUaGCUCUGU---G---------------CGCUACGCGC- -5'
28095 5' -54.6 NC_005887.1 + 28043 0.68 0.554369
Target:  5'- cGUCGGcguGAUCGAG-CAgGCGcUGCGCc -3'
miRNA:   3'- -UAGCU---CUAGCUCuGUgCGCuACGCGc -5'
28095 5' -54.6 NC_005887.1 + 14692 0.68 0.554369
Target:  5'- gAUCGGGcucGUCGcGGCGgGCGGgccggGCGCGg -3'
miRNA:   3'- -UAGCUC---UAGCuCUGUgCGCUa----CGCGC- -5'
28095 5' -54.6 NC_005887.1 + 40731 0.68 0.543381
Target:  5'- uUCGAGGucgccgcccgcgUCGAGGCgaucgccguugGCGCGccGCGCGc -3'
miRNA:   3'- uAGCUCU------------AGCUCUG-----------UGCGCuaCGCGC- -5'
28095 5' -54.6 NC_005887.1 + 22979 0.68 0.543381
Target:  5'- aAUCGAGuugaucGUCGccGCACGCGucugcUGCGCGa -3'
miRNA:   3'- -UAGCUC------UAGCucUGUGCGCu----ACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.