miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 15844 0.72 0.173389
Target:  5'- cGCGGCGCgaucgagggaaacGC-CCGCGCGCaGcAGGCGc -3'
miRNA:   3'- -CGUCGCG-------------CGuGGCGUGCGaCaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 2528 0.71 0.178601
Target:  5'- uGCcGCaCGCugCGCaagGCGCUGUcGGGCGg -3'
miRNA:   3'- -CGuCGcGCGugGCG---UGCGACA-UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 32502 0.71 0.18346
Target:  5'- uGCGGCGCGCGgCGUucagguuggccGCGCUGaccGGCu -3'
miRNA:   3'- -CGUCGCGCGUgGCG-----------UGCGACau-CCGc -5'
28096 3' -59.7 NC_005887.1 + 37055 0.71 0.188435
Target:  5'- -uGGCGUagaacuuCGCCGCGCGCUGcucGGGCGa -3'
miRNA:   3'- cgUCGCGc------GUGGCGUGCGACa--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11112 0.71 0.188435
Target:  5'- uGguGCGCGCGaaGCugGCcg-AGGCGc -3'
miRNA:   3'- -CguCGCGCGUggCGugCGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 27368 0.71 0.193528
Target:  5'- uGCGGCcUGCGCgGCcuGCGCggcGUAGGCGu -3'
miRNA:   3'- -CGUCGcGCGUGgCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 11800 0.71 0.193528
Target:  5'- gGCGGCGuCGguUCGUACGCUaagGcAGGCGg -3'
miRNA:   3'- -CGUCGC-GCguGGCGUGCGA---CaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28234 0.71 0.193528
Target:  5'- aGCAGCGCGCGCaGCuuCGCgagcGGCGc -3'
miRNA:   3'- -CGUCGCGCGUGgCGu-GCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 40806 0.71 0.198741
Target:  5'- gGCGGCGaCGCGCCGCuCGacgaUGacgAGGUGa -3'
miRNA:   3'- -CGUCGC-GCGUGGCGuGCg---ACa--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 37856 0.71 0.198741
Target:  5'- aGCAGaCGCGCGaugCGCGCGCcGUucGGCa -3'
miRNA:   3'- -CGUC-GCGCGUg--GCGUGCGaCAu-CCGc -5'
28096 3' -59.7 NC_005887.1 + 1598 0.71 0.198741
Target:  5'- cGCGGCGCGCcaacggcgAUCGCcucgACGCgGgcGGCGa -3'
miRNA:   3'- -CGUCGCGCG--------UGGCG----UGCGaCauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 8193 0.71 0.203538
Target:  5'- gGCAGUucgaugucuacccGCGCACCGaCACGCgc-GGGCu -3'
miRNA:   3'- -CGUCG-------------CGCGUGGC-GUGCGacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 27467 0.7 0.207885
Target:  5'- aGCAGCuggcgcauucugccGCGCGgUGCGCGCUGUugcuGCGg -3'
miRNA:   3'- -CGUCG--------------CGCGUgGCGUGCGACAuc--CGC- -5'
28096 3' -59.7 NC_005887.1 + 9610 0.7 0.209536
Target:  5'- cCGGCGCGCacgcgagcGCCGCGCuaccccGCcGUGGGUGa -3'
miRNA:   3'- cGUCGCGCG--------UGGCGUG------CGaCAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16513 0.7 0.209536
Target:  5'- cGCAGgccgauCGCGuCGCCGCcgGCGCcgaGUGGGCGc -3'
miRNA:   3'- -CGUC------GCGC-GUGGCG--UGCGa--CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 16692 0.7 0.21512
Target:  5'- -uGGCGaCGCGCUGCG-GCUGgcGGUGa -3'
miRNA:   3'- cgUCGC-GCGUGGCGUgCGACauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 30341 0.7 0.220832
Target:  5'- gGCGuGCGUGCGCCGgAUGUcugcaacGUGGGCGc -3'
miRNA:   3'- -CGU-CGCGCGUGGCgUGCGa------CAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 17180 0.7 0.222571
Target:  5'- -gAGCGCGCgaacgcgGCCGCACGCggcaaUGUugcgccgcgcaagcaGGGCGu -3'
miRNA:   3'- cgUCGCGCG-------UGGCGUGCG-----ACA---------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28538 0.7 0.226673
Target:  5'- cGCucaCGCGCGCCGgGCuGCugaauuUGUAGGCGu -3'
miRNA:   3'- -CGuc-GCGCGUGGCgUG-CG------ACAUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 22656 0.7 0.238746
Target:  5'- cGUGGCGCGCAUugauauUGCAUcgGCcgGUGGGCGc -3'
miRNA:   3'- -CGUCGCGCGUG------GCGUG--CGa-CAUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.