miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 15281 0.7 0.815729
Target:  5'- aAGCGCgGCacCGAGUUCGUGAagAAGUCGg -3'
miRNA:   3'- -UCGCG-CGc-GCUUAAGCGUUa-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 27429 0.7 0.815729
Target:  5'- cGGCGUGCGuCGA--UCGCGAguGAUUGc -3'
miRNA:   3'- -UCGCGCGC-GCUuaAGCGUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 13167 0.7 0.844742
Target:  5'- cGCGCGCGCGcagacagCGgGAgcGGUCGa -3'
miRNA:   3'- uCGCGCGCGCuuaa---GCgUUauUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 2263 0.7 0.844742
Target:  5'- gGGCGCGCGUaAGUUCG----GGAUCGa -3'
miRNA:   3'- -UCGCGCGCGcUUAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 34268 0.7 0.844742
Target:  5'- uGCGCGCGCGcuUUCGUGAa------ -3'
miRNA:   3'- uCGCGCGCGCuuAAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 20784 0.69 0.853912
Target:  5'- cGUG-GCGCaAAUUCGCAGUuugGAAUCGc -3'
miRNA:   3'- uCGCgCGCGcUUAAGCGUUA---UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40690 0.69 0.853912
Target:  5'- uGGCGCGCGCGcacggcUgGCAGgagccGAUCGa -3'
miRNA:   3'- -UCGCGCGCGCuua---AgCGUUau---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 41821 0.69 0.862813
Target:  5'- cGGCGCGCgGCGGccgaCGCGuucAGAUCGa -3'
miRNA:   3'- -UCGCGCG-CGCUuaa-GCGUua-UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 27929 0.69 0.869735
Target:  5'- uGCGCGCGuCGggUcCGCuugaacguGUCGg -3'
miRNA:   3'- uCGCGCGC-GCuuAaGCGuuauu---UAGC- -5'
28102 3' -47.9 NC_005887.1 + 6293 0.69 0.871437
Target:  5'- cGGCGUGCGCGAg--CGC-----GUCGa -3'
miRNA:   3'- -UCGCGCGCGCUuaaGCGuuauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11735 0.69 0.871437
Target:  5'- cGGCGCGCaCGAAUgcaCGCAAcagcauGAUCa -3'
miRNA:   3'- -UCGCGCGcGCUUAa--GCGUUau----UUAGc -5'
28102 3' -47.9 NC_005887.1 + 13631 0.69 0.871437
Target:  5'- uAGCGCGCGCGug-UCGU------UCGa -3'
miRNA:   3'- -UCGCGCGCGCuuaAGCGuuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 35076 0.68 0.895557
Target:  5'- cGGCGgGCGCGAcUUCG----AAGUCGu -3'
miRNA:   3'- -UCGCgCGCGCUuAAGCguuaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 8094 0.68 0.902991
Target:  5'- aAGCGCGCGCGcAGcUCGCcgcgc-UCGc -3'
miRNA:   3'- -UCGCGCGCGC-UUaAGCGuuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 15316 0.68 0.902991
Target:  5'- cAGCGUGCGCGG--UCGCGcgc--UCGc -3'
miRNA:   3'- -UCGCGCGCGCUuaAGCGUuauuuAGC- -5'
28102 3' -47.9 NC_005887.1 + 6475 0.68 0.910113
Target:  5'- -aCGgGCGCGGcgUCGCGGU--GUCu -3'
miRNA:   3'- ucGCgCGCGCUuaAGCGUUAuuUAGc -5'
28102 3' -47.9 NC_005887.1 + 29935 0.68 0.910113
Target:  5'- cGCGCGCGCGGugUCGUugcccugcuGGUAcuGGUUGa -3'
miRNA:   3'- uCGCGCGCGCUuaAGCG---------UUAU--UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 40864 0.68 0.910113
Target:  5'- cGCGcCGCGCGAGcgcCGCAcgccGUCGg -3'
miRNA:   3'- uCGC-GCGCGCUUaa-GCGUuauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 26964 0.68 0.910113
Target:  5'- -cCGCGCGCGAucagCGCGGc--GUCGa -3'
miRNA:   3'- ucGCGCGCGCUuaa-GCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 29198 0.68 0.910113
Target:  5'- cGCGCGCGCGGcaa-GCGAcGAGaCGa -3'
miRNA:   3'- uCGCGCGCGCUuaagCGUUaUUUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.