miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 3' -57.8 NC_005887.1 + 40429 0.67 0.432404
Target:  5'- --gCGCGCGACGGCGGcacggccgcGCUcGACGg-- -3'
miRNA:   3'- ucgGCGCGCUGCUGCC---------UGA-CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 23369 0.67 0.432404
Target:  5'- gGGCCGCaguGCGGCGuuguucuucggcGCGGGCUG-CGg-- -3'
miRNA:   3'- -UCGGCG---CGCUGC------------UGCCUGACuGCaua -5'
28105 3' -57.8 NC_005887.1 + 37830 0.67 0.42283
Target:  5'- uGCCGCGCaacGACGACGGcaaguugGGCGg-- -3'
miRNA:   3'- uCGGCGCG---CUGCUGCCuga----CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 14093 0.67 0.42283
Target:  5'- aGGCUGCGcCGGCGGCGcGCcGGCGg-- -3'
miRNA:   3'- -UCGGCGC-GCUGCUGCcUGaCUGCaua -5'
28105 3' -57.8 NC_005887.1 + 26762 0.67 0.42188
Target:  5'- cGGCCGCGCGACGGCuguaucgcgacauGGAacggcaGAUGUu- -3'
miRNA:   3'- -UCGGCGCGCUGCUG-------------CCUga----CUGCAua -5'
28105 3' -57.8 NC_005887.1 + 30826 0.67 0.413386
Target:  5'- cGCCGCGCGcACGGuCGaGCUGACc--- -3'
miRNA:   3'- uCGGCGCGC-UGCU-GCcUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 29709 0.67 0.413386
Target:  5'- cGCCGCGCgugaguGACGACGGcgagaucaGCUauaugGGCGUGa -3'
miRNA:   3'- uCGGCGCG------CUGCUGCC--------UGA-----CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 26143 0.68 0.404072
Target:  5'- cGCCGCGCGGgccgcUGACGcGCUGACc--- -3'
miRNA:   3'- uCGGCGCGCU-----GCUGCcUGACUGcaua -5'
28105 3' -57.8 NC_005887.1 + 32713 0.68 0.404072
Target:  5'- uAGCCGCGCGguucacccACGGCGGgguagcgcggcGCUcGCGUGc -3'
miRNA:   3'- -UCGGCGCGC--------UGCUGCC-----------UGAcUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 31227 0.68 0.394892
Target:  5'- aAGUgGCGCGAcaCGAUGGuGCaGGCGUAUg -3'
miRNA:   3'- -UCGgCGCGCU--GCUGCC-UGaCUGCAUA- -5'
28105 3' -57.8 NC_005887.1 + 23515 0.68 0.385847
Target:  5'- cGGCCGCGCuGACGaacgcGCGGgugaGCUGgcaGCGUAc -3'
miRNA:   3'- -UCGGCGCG-CUGC-----UGCC----UGAC---UGCAUa -5'
28105 3' -57.8 NC_005887.1 + 32422 0.68 0.376941
Target:  5'- uGGCCG-GCGGCGAUGuGGCcGGCGg-- -3'
miRNA:   3'- -UCGGCgCGCUGCUGC-CUGaCUGCaua -5'
28105 3' -57.8 NC_005887.1 + 12600 0.69 0.359549
Target:  5'- cGGCCGCGaCGcuCGGCGuGCUGACGc-- -3'
miRNA:   3'- -UCGGCGC-GCu-GCUGCcUGACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 21267 0.69 0.359549
Target:  5'- gGGCaC-CGCGGCGGCGGcguaugcgcuGCUGGCGUc- -3'
miRNA:   3'- -UCG-GcGCGCUGCUGCC----------UGACUGCAua -5'
28105 3' -57.8 NC_005887.1 + 40870 0.69 0.354442
Target:  5'- cGCCGCGCGcgucgaagaagaaacGCGACGG--UGACGa-- -3'
miRNA:   3'- uCGGCGCGC---------------UGCUGCCugACUGCaua -5'
28105 3' -57.8 NC_005887.1 + 18479 0.69 0.351065
Target:  5'- cGUCGUGCuGACGACGGcGCcgcGGCGUAg -3'
miRNA:   3'- uCGGCGCG-CUGCUGCC-UGa--CUGCAUa -5'
28105 3' -57.8 NC_005887.1 + 13394 0.69 0.342725
Target:  5'- aGGCCG-GCG-CGGCGGACgucGGCGg-- -3'
miRNA:   3'- -UCGGCgCGCuGCUGCCUGa--CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 16474 0.69 0.341899
Target:  5'- cGaCCGCGCGGCaggauccGGCGGGCUGGuCGg-- -3'
miRNA:   3'- uC-GGCGCGCUG-------CUGCCUGACU-GCaua -5'
28105 3' -57.8 NC_005887.1 + 23503 0.69 0.326476
Target:  5'- aAGCgGCGgGAUGGCGGGCggcugcGACGa-- -3'
miRNA:   3'- -UCGgCGCgCUGCUGCCUGa-----CUGCaua -5'
28105 3' -57.8 NC_005887.1 + 30275 0.7 0.310806
Target:  5'- aGGCCGCGaCG-CGGCGuGGCUGGCc--- -3'
miRNA:   3'- -UCGGCGC-GCuGCUGC-CUGACUGcaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.