Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28105 | 5' | -46.1 | NC_005887.1 | + | 2753 | 1.11 | 0.004567 |
Target: 5'- cGCAUACGUAUGCGCAUAAACGCACUAu -3' miRNA: 3'- -CGUAUGCAUACGCGUAUUUGCGUGAU- -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 2807 | 0.9 | 0.106113 |
Target: 5'- cGCAUACGUAUGCGCAU--ACGCAUa- -3' miRNA: 3'- -CGUAUGCAUACGCGUAuuUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 37675 | 0.79 | 0.452836 |
Target: 5'- ----gUGUAUGCGCGUGAcgcGCGCACUGa -3' miRNA: 3'- cguauGCAUACGCGUAUU---UGCGUGAU- -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 40134 | 0.74 | 0.688442 |
Target: 5'- aGCGUGCG-GUGCGCGcu-GCGCGCc- -3' miRNA: 3'- -CGUAUGCaUACGCGUauuUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 40006 | 0.73 | 0.780902 |
Target: 5'- uGCAggACGUcgcgGUGCGCAUcAugGCGCg- -3' miRNA: 3'- -CGUa-UGCA----UACGCGUAuUugCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 22595 | 0.72 | 0.802446 |
Target: 5'- cGCAauCGUGUGCGUGUGGaucgcuGCGCGCg- -3' miRNA: 3'- -CGUauGCAUACGCGUAUU------UGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 27011 | 0.72 | 0.812901 |
Target: 5'- uGCAccuuCGUGUGCGCAaccucggcGAGCGCGCg- -3' miRNA: 3'- -CGUau--GCAUACGCGUa-------UUUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 30846 | 0.72 | 0.823125 |
Target: 5'- uGCAUGCc---GCGCAUGuuGAUGCGCUGg -3' miRNA: 3'- -CGUAUGcauaCGCGUAU--UUGCGUGAU- -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 17490 | 0.72 | 0.833106 |
Target: 5'- uGCAgcugACGgccGUGCAUGAugGCACg- -3' miRNA: 3'- -CGUa---UGCauaCGCGUAUUugCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 711 | 0.71 | 0.842829 |
Target: 5'- uCAUGCGcGUGCGCucgccGCGCGCUu -3' miRNA: 3'- cGUAUGCaUACGCGuauu-UGCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 15479 | 0.71 | 0.870342 |
Target: 5'- ---cACGUAUGCGCGUcGACGaucCGCUGc -3' miRNA: 3'- cguaUGCAUACGCGUAuUUGC---GUGAU- -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 17246 | 0.7 | 0.895157 |
Target: 5'- cGCGUGCGgc--CGCGUucGCGCGCUc -3' miRNA: 3'- -CGUAUGCauacGCGUAuuUGCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 37066 | 0.7 | 0.9101 |
Target: 5'- cGCGUACGgccUGCGCGUGcuCGCcgGCg- -3' miRNA: 3'- -CGUAUGCau-ACGCGUAUuuGCG--UGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 21276 | 0.69 | 0.917076 |
Target: 5'- gGCGgcgGCGUAUGCGCugcuGGCGuCGCc- -3' miRNA: 3'- -CGUa--UGCAUACGCGuau-UUGC-GUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 41640 | 0.69 | 0.923717 |
Target: 5'- uGC-UGCGUcUGCGCG---GCGCACg- -3' miRNA: 3'- -CGuAUGCAuACGCGUauuUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 41953 | 0.69 | 0.930022 |
Target: 5'- gGCGUgcucGCGUG-GUGCGUGcgcGGCGCGCUc -3' miRNA: 3'- -CGUA----UGCAUaCGCGUAU---UUGCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 18089 | 0.68 | 0.951906 |
Target: 5'- -aGUcCGgc-GCGCGUAAGCGCGCg- -3' miRNA: 3'- cgUAuGCauaCGCGUAUUUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 26048 | 0.68 | 0.956558 |
Target: 5'- ---gGCGUAUGUgGCAUGGugGUGCUc -3' miRNA: 3'- cguaUGCAUACG-CGUAUUugCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 14607 | 0.68 | 0.956558 |
Target: 5'- cGCGUACGgccgucgGCGCcgucgaGGGCGCGCUc -3' miRNA: 3'- -CGUAUGCaua----CGCGua----UUUGCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 16012 | 0.68 | 0.960895 |
Target: 5'- gGCGUGCG---GCGCGUGgccGGCGCAUc- -3' miRNA: 3'- -CGUAUGCauaCGCGUAU---UUGCGUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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