miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 5' -46.1 NC_005887.1 + 711 0.71 0.842829
Target:  5'- uCAUGCGcGUGCGCucgccGCGCGCUu -3'
miRNA:   3'- cGUAUGCaUACGCGuauu-UGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 2753 1.11 0.004567
Target:  5'- cGCAUACGUAUGCGCAUAAACGCACUAu -3'
miRNA:   3'- -CGUAUGCAUACGCGUAUUUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 2807 0.9 0.106113
Target:  5'- cGCAUACGUAUGCGCAU--ACGCAUa- -3'
miRNA:   3'- -CGUAUGCAUACGCGUAuuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 5149 0.67 0.972085
Target:  5'- uGCccgACGUcgGCGCGccgcugaugcUGAugGCACg- -3'
miRNA:   3'- -CGua-UGCAuaCGCGU----------AUUugCGUGau -5'
28105 5' -46.1 NC_005887.1 + 9924 0.66 0.980759
Target:  5'- cCGUACG-AUGUGCG---GCGCGCg- -3'
miRNA:   3'- cGUAUGCaUACGCGUauuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 11729 0.67 0.968649
Target:  5'- cGCGcACGgc-GCGCAcGAAUGCACg- -3'
miRNA:   3'- -CGUaUGCauaCGCGUaUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 11796 0.68 0.960895
Target:  5'- uGCGUGCauucGUGCGCGccguGCGCGCg- -3'
miRNA:   3'- -CGUAUGca--UACGCGUauu-UGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 13007 0.66 0.985303
Target:  5'- aGCGUcGCGgcuUGCuGCGgcagGGACGCGCUc -3'
miRNA:   3'- -CGUA-UGCau-ACG-CGUa---UUUGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 14607 0.68 0.956558
Target:  5'- cGCGUACGgccgucgGCGCcgucgaGGGCGCGCUc -3'
miRNA:   3'- -CGUAUGCaua----CGCGua----UUUGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 15479 0.71 0.870342
Target:  5'- ---cACGUAUGCGCGUcGACGaucCGCUGc -3'
miRNA:   3'- cguaUGCAUACGCGUAuUUGC---GUGAU- -5'
28105 5' -46.1 NC_005887.1 + 15887 0.66 0.987242
Target:  5'- aGCAgcuCG-GUGCGCuc-GACGCGCa- -3'
miRNA:   3'- -CGUau-GCaUACGCGuauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 15967 0.67 0.978128
Target:  5'- cGCAgguCGgccagcUGCGCGUcGAGCGCACc- -3'
miRNA:   3'- -CGUau-GCau----ACGCGUA-UUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 16012 0.68 0.960895
Target:  5'- gGCGUGCG---GCGCGUGgccGGCGCAUc- -3'
miRNA:   3'- -CGUAUGCauaCGCGUAU---UUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 17246 0.7 0.895157
Target:  5'- cGCGUGCGgc--CGCGUucGCGCGCUc -3'
miRNA:   3'- -CGUAUGCauacGCGUAuuUGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 17490 0.72 0.833106
Target:  5'- uGCAgcugACGgccGUGCAUGAugGCACg- -3'
miRNA:   3'- -CGUa---UGCauaCGCGUAUUugCGUGau -5'
28105 5' -46.1 NC_005887.1 + 18089 0.68 0.951906
Target:  5'- -aGUcCGgc-GCGCGUAAGCGCGCg- -3'
miRNA:   3'- cgUAuGCauaCGCGUAUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 21276 0.69 0.917076
Target:  5'- gGCGgcgGCGUAUGCGCugcuGGCGuCGCc- -3'
miRNA:   3'- -CGUa--UGCAUACGCGuau-UUGC-GUGau -5'
28105 5' -46.1 NC_005887.1 + 22595 0.72 0.802446
Target:  5'- cGCAauCGUGUGCGUGUGGaucgcuGCGCGCg- -3'
miRNA:   3'- -CGUauGCAUACGCGUAUU------UGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 23503 0.67 0.964922
Target:  5'- uGCcgACGUGUucggccGCGCugacGAACGCGCg- -3'
miRNA:   3'- -CGuaUGCAUA------CGCGua--UUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 26048 0.68 0.956558
Target:  5'- ---gGCGUAUGUgGCAUGGugGUGCUc -3'
miRNA:   3'- cguaUGCAUACG-CGUAUUugCGUGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.