miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 5' -46.1 NC_005887.1 + 41953 0.69 0.930022
Target:  5'- gGCGUgcucGCGUG-GUGCGUGcgcGGCGCGCUc -3'
miRNA:   3'- -CGUA----UGCAUaCGCGUAU---UUGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 41704 0.67 0.972085
Target:  5'- aGCGUGCGcc-GCGCA--GACGCAg-- -3'
miRNA:   3'- -CGUAUGCauaCGCGUauUUGCGUgau -5'
28105 5' -46.1 NC_005887.1 + 41640 0.69 0.923717
Target:  5'- uGC-UGCGUcUGCGCG---GCGCACg- -3'
miRNA:   3'- -CGuAUGCAuACGCGUauuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 41267 0.67 0.978128
Target:  5'- gGCAaugGCGccgucgaccUGCGCAcGGGCGCGCUGc -3'
miRNA:   3'- -CGUa--UGCau-------ACGCGUaUUUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 41004 0.66 0.983146
Target:  5'- aGCAUGCGcUcgGCGUugccgaacucgGUGcGCGCGCg- -3'
miRNA:   3'- -CGUAUGC-AuaCGCG-----------UAUuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 40134 0.74 0.688442
Target:  5'- aGCGUGCG-GUGCGCGcu-GCGCGCc- -3'
miRNA:   3'- -CGUAUGCaUACGCGUauuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 40006 0.73 0.780902
Target:  5'- uGCAggACGUcgcgGUGCGCAUcAugGCGCg- -3'
miRNA:   3'- -CGUa-UGCA----UACGCGUAuUugCGUGau -5'
28105 5' -46.1 NC_005887.1 + 39909 0.66 0.985303
Target:  5'- aGCAUACG-GUGCGCGcAGAUcgagccggGCGCg- -3'
miRNA:   3'- -CGUAUGCaUACGCGUaUUUG--------CGUGau -5'
28105 5' -46.1 NC_005887.1 + 39804 0.68 0.960895
Target:  5'- uCAUAgGaaaUGUGCGCA-GAACGCGCg- -3'
miRNA:   3'- cGUAUgC---AUACGCGUaUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 37675 0.79 0.452836
Target:  5'- ----gUGUAUGCGCGUGAcgcGCGCACUGa -3'
miRNA:   3'- cguauGCAUACGCGUAUU---UGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 37066 0.7 0.9101
Target:  5'- cGCGUACGgccUGCGCGUGcuCGCcgGCg- -3'
miRNA:   3'- -CGUAUGCau-ACGCGUAUuuGCG--UGau -5'
28105 5' -46.1 NC_005887.1 + 34717 0.66 0.980759
Target:  5'- cGCuUGCG-GUGCGCGgcGAUGUACa- -3'
miRNA:   3'- -CGuAUGCaUACGCGUauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 32775 0.66 0.983146
Target:  5'- uGCAgcCGgcucGUGCGCAggaucGGCGCGCg- -3'
miRNA:   3'- -CGUauGCa---UACGCGUau---UUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 32743 0.66 0.980759
Target:  5'- cGCGgcgcuCGcGUGCGCGccGGCGCGCg- -3'
miRNA:   3'- -CGUau---GCaUACGCGUauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 32654 0.67 0.978128
Target:  5'- gGCugcACGUgcacuggaacAUGCGCGUc-ACGCACUGg -3'
miRNA:   3'- -CGua-UGCA----------UACGCGUAuuUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 30846 0.72 0.823125
Target:  5'- uGCAUGCc---GCGCAUGuuGAUGCGCUGg -3'
miRNA:   3'- -CGUAUGcauaCGCGUAU--UUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 30560 0.67 0.964922
Target:  5'- uGCAguuuUGCG-GUGCGCA---ACGCACg- -3'
miRNA:   3'- -CGU----AUGCaUACGCGUauuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 28600 0.67 0.978128
Target:  5'- aGCAgccCGgc-GCGCGUGAGCGUGCc- -3'
miRNA:   3'- -CGUau-GCauaCGCGUAUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 27856 0.66 0.983146
Target:  5'- cGCcUGCGUcgGCGCcgucGUcAugGCGCUc -3'
miRNA:   3'- -CGuAUGCAuaCGCG----UAuUugCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 27011 0.72 0.812901
Target:  5'- uGCAccuuCGUGUGCGCAaccucggcGAGCGCGCg- -3'
miRNA:   3'- -CGUau--GCAUACGCGUa-------UUUGCGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.