miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28105 5' -46.1 NC_005887.1 + 26418 0.66 0.987242
Target:  5'- aGCugGCGgccGCGCGgGAACGCGCg- -3'
miRNA:   3'- -CGuaUGCauaCGCGUaUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 23503 0.67 0.964922
Target:  5'- uGCcgACGUGUucggccGCGCugacGAACGCGCg- -3'
miRNA:   3'- -CGuaUGCAUA------CGCGua--UUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 11729 0.67 0.968649
Target:  5'- cGCGcACGgc-GCGCAcGAAUGCACg- -3'
miRNA:   3'- -CGUaUGCauaCGCGUaUUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 5149 0.67 0.972085
Target:  5'- uGCccgACGUcgGCGCGccgcugaugcUGAugGCACg- -3'
miRNA:   3'- -CGua-UGCAuaCGCGU----------AUUugCGUGau -5'
28105 5' -46.1 NC_005887.1 + 41267 0.67 0.978128
Target:  5'- gGCAaugGCGccgucgaccUGCGCAcGGGCGCGCUGc -3'
miRNA:   3'- -CGUa--UGCau-------ACGCGUaUUUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 34717 0.66 0.980759
Target:  5'- cGCuUGCG-GUGCGCGgcGAUGUACa- -3'
miRNA:   3'- -CGuAUGCaUACGCGUauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 32743 0.66 0.980759
Target:  5'- cGCGgcgcuCGcGUGCGCGccGGCGCGCg- -3'
miRNA:   3'- -CGUau---GCaUACGCGUauUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 32775 0.66 0.983146
Target:  5'- uGCAgcCGgcucGUGCGCAggaucGGCGCGCg- -3'
miRNA:   3'- -CGUauGCa---UACGCGUau---UUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 39909 0.66 0.985303
Target:  5'- aGCAUACG-GUGCGCGcAGAUcgagccggGCGCg- -3'
miRNA:   3'- -CGUAUGCaUACGCGUaUUUG--------CGUGau -5'
28105 5' -46.1 NC_005887.1 + 26048 0.68 0.956558
Target:  5'- ---gGCGUAUGUgGCAUGGugGUGCUc -3'
miRNA:   3'- cguaUGCAUACG-CGUAUUugCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 14607 0.68 0.956558
Target:  5'- cGCGUACGgccgucgGCGCcgucgaGGGCGCGCUc -3'
miRNA:   3'- -CGUAUGCaua----CGCGua----UUUGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 41953 0.69 0.930022
Target:  5'- gGCGUgcucGCGUG-GUGCGUGcgcGGCGCGCUc -3'
miRNA:   3'- -CGUA----UGCAUaCGCGUAU---UUGCGUGAu -5'
28105 5' -46.1 NC_005887.1 + 40134 0.74 0.688442
Target:  5'- aGCGUGCG-GUGCGCGcu-GCGCGCc- -3'
miRNA:   3'- -CGUAUGCaUACGCGUauuUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 40006 0.73 0.780902
Target:  5'- uGCAggACGUcgcgGUGCGCAUcAugGCGCg- -3'
miRNA:   3'- -CGUa-UGCA----UACGCGUAuUugCGUGau -5'
28105 5' -46.1 NC_005887.1 + 22595 0.72 0.802446
Target:  5'- cGCAauCGUGUGCGUGUGGaucgcuGCGCGCg- -3'
miRNA:   3'- -CGUauGCAUACGCGUAUU------UGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 27011 0.72 0.812901
Target:  5'- uGCAccuuCGUGUGCGCAaccucggcGAGCGCGCg- -3'
miRNA:   3'- -CGUau--GCAUACGCGUa-------UUUGCGUGau -5'
28105 5' -46.1 NC_005887.1 + 30846 0.72 0.823125
Target:  5'- uGCAUGCc---GCGCAUGuuGAUGCGCUGg -3'
miRNA:   3'- -CGUAUGcauaCGCGUAU--UUGCGUGAU- -5'
28105 5' -46.1 NC_005887.1 + 17490 0.72 0.833106
Target:  5'- uGCAgcugACGgccGUGCAUGAugGCACg- -3'
miRNA:   3'- -CGUa---UGCauaCGCGUAUUugCGUGau -5'
28105 5' -46.1 NC_005887.1 + 21276 0.69 0.917076
Target:  5'- gGCGgcgGCGUAUGCGCugcuGGCGuCGCc- -3'
miRNA:   3'- -CGUa--UGCAUACGCGuau-UUGC-GUGau -5'
28105 5' -46.1 NC_005887.1 + 41640 0.69 0.923717
Target:  5'- uGC-UGCGUcUGCGCG---GCGCACg- -3'
miRNA:   3'- -CGuAUGCAuACGCGUauuUGCGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.