Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28105 | 5' | -46.1 | NC_005887.1 | + | 13007 | 0.66 | 0.985303 |
Target: 5'- aGCGUcGCGgcuUGCuGCGgcagGGACGCGCUc -3' miRNA: 3'- -CGUA-UGCau-ACG-CGUa---UUUGCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 39804 | 0.68 | 0.960895 |
Target: 5'- uCAUAgGaaaUGUGCGCA-GAACGCGCg- -3' miRNA: 3'- cGUAUgC---AUACGCGUaUUUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 30560 | 0.67 | 0.964922 |
Target: 5'- uGCAguuuUGCG-GUGCGCA---ACGCACg- -3' miRNA: 3'- -CGU----AUGCaUACGCGUauuUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 41704 | 0.67 | 0.972085 |
Target: 5'- aGCGUGCGcc-GCGCA--GACGCAg-- -3' miRNA: 3'- -CGUAUGCauaCGCGUauUUGCGUgau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 28600 | 0.67 | 0.978128 |
Target: 5'- aGCAgccCGgc-GCGCGUGAGCGUGCc- -3' miRNA: 3'- -CGUau-GCauaCGCGUAUUUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 15967 | 0.67 | 0.978128 |
Target: 5'- cGCAgguCGgccagcUGCGCGUcGAGCGCACc- -3' miRNA: 3'- -CGUau-GCau----ACGCGUA-UUUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 37675 | 0.79 | 0.452836 |
Target: 5'- ----gUGUAUGCGCGUGAcgcGCGCACUGa -3' miRNA: 3'- cguauGCAUACGCGUAUU---UGCGUGAU- -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 711 | 0.71 | 0.842829 |
Target: 5'- uCAUGCGcGUGCGCucgccGCGCGCUu -3' miRNA: 3'- cGUAUGCaUACGCGuauu-UGCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 37066 | 0.7 | 0.9101 |
Target: 5'- cGCGUACGgccUGCGCGUGcuCGCcgGCg- -3' miRNA: 3'- -CGUAUGCau-ACGCGUAUuuGCG--UGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 11796 | 0.68 | 0.960895 |
Target: 5'- uGCGUGCauucGUGCGCGccguGCGCGCg- -3' miRNA: 3'- -CGUAUGca--UACGCGUauu-UGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 32654 | 0.67 | 0.978128 |
Target: 5'- gGCugcACGUgcacuggaacAUGCGCGUc-ACGCACUGg -3' miRNA: 3'- -CGua-UGCA----------UACGCGUAuuUGCGUGAU- -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 27856 | 0.66 | 0.983146 |
Target: 5'- cGCcUGCGUcgGCGCcgucGUcAugGCGCUc -3' miRNA: 3'- -CGuAUGCAuaCGCG----UAuUugCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 17246 | 0.7 | 0.895157 |
Target: 5'- cGCGUGCGgc--CGCGUucGCGCGCUc -3' miRNA: 3'- -CGUAUGCauacGCGUAuuUGCGUGAu -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 41004 | 0.66 | 0.983146 |
Target: 5'- aGCAUGCGcUcgGCGUugccgaacucgGUGcGCGCGCg- -3' miRNA: 3'- -CGUAUGC-AuaCGCG-----------UAUuUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 16012 | 0.68 | 0.960895 |
Target: 5'- gGCGUGCG---GCGCGUGgccGGCGCAUc- -3' miRNA: 3'- -CGUAUGCauaCGCGUAU---UUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 15479 | 0.71 | 0.870342 |
Target: 5'- ---cACGUAUGCGCGUcGACGaucCGCUGc -3' miRNA: 3'- cguaUGCAUACGCGUAuUUGC---GUGAU- -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 2807 | 0.9 | 0.106113 |
Target: 5'- cGCAUACGUAUGCGCAU--ACGCAUa- -3' miRNA: 3'- -CGUAUGCAUACGCGUAuuUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 9924 | 0.66 | 0.980759 |
Target: 5'- cCGUACG-AUGUGCG---GCGCGCg- -3' miRNA: 3'- cGUAUGCaUACGCGUauuUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 18089 | 0.68 | 0.951906 |
Target: 5'- -aGUcCGgc-GCGCGUAAGCGCGCg- -3' miRNA: 3'- cgUAuGCauaCGCGUAUUUGCGUGau -5' |
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28105 | 5' | -46.1 | NC_005887.1 | + | 5149 | 0.67 | 0.972085 |
Target: 5'- uGCccgACGUcgGCGCGccgcugaugcUGAugGCACg- -3' miRNA: 3'- -CGua-UGCAuaCGCGU----------AUUugCGUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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