miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28106 3' -59.7 NC_005887.1 + 2999 1.11 0.000185
Target:  5'- uCGUCCGUCAACGCGCCUGCGGCCAGCg -3'
miRNA:   3'- -GCAGGCAGUUGCGCGGACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 1086 0.8 0.048376
Target:  5'- uCGUCCGcuUCAagccgguguacagcGCGCGCacgGCGGCCGGCa -3'
miRNA:   3'- -GCAGGC--AGU--------------UGCGCGga-CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 11377 0.79 0.051679
Target:  5'- gCGggCGUCAGCGCaGCCggagcgcugGCGGCCGGCg -3'
miRNA:   3'- -GCagGCAGUUGCG-CGGa--------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 19597 0.77 0.073612
Target:  5'- cCGUCCGUCcACGCcucguuucucaggucGCCUGCGccgaugcucGCCGGCa -3'
miRNA:   3'- -GCAGGCAGuUGCG---------------CGGACGC---------CGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 34704 0.77 0.077024
Target:  5'- gCGgCCGUCGuCGCGCUUGCGGUgcgCGGCg -3'
miRNA:   3'- -GCaGGCAGUuGCGCGGACGCCG---GUCG- -5'
28106 3' -59.7 NC_005887.1 + 26069 0.76 0.093814
Target:  5'- -cUCCugGUCAGCGCGUCaGCGGCCcGCg -3'
miRNA:   3'- gcAGG--CAGUUGCGCGGaCGCCGGuCG- -5'
28106 3' -59.7 NC_005887.1 + 11205 0.75 0.102026
Target:  5'- aCGUCCauuUCAAUGCGCCgccacgGCgccucGGCCAGCu -3'
miRNA:   3'- -GCAGGc--AGUUGCGCGGa-----CG-----CCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 35321 0.75 0.114031
Target:  5'- uCGcUCCacugCcGCGCGCCgcgGCGGCCGGCc -3'
miRNA:   3'- -GC-AGGca--GuUGCGCGGa--CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 32411 0.74 0.123889
Target:  5'- -uUUCGUCGACGUgGCCggcggcgaUGUGGCCGGCg -3'
miRNA:   3'- gcAGGCAGUUGCG-CGG--------ACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 25003 0.74 0.130894
Target:  5'- cCGagCGUCAGCucGCGCCgGCGGCCgccGGCc -3'
miRNA:   3'- -GCagGCAGUUG--CGCGGaCGCCGG---UCG- -5'
28106 3' -59.7 NC_005887.1 + 2779 0.73 0.138262
Target:  5'- aGUCCGUCGucGCGCGgCU-CGGCC-GCu -3'
miRNA:   3'- gCAGGCAGU--UGCGCgGAcGCCGGuCG- -5'
28106 3' -59.7 NC_005887.1 + 14619 0.73 0.14601
Target:  5'- uCGgcgCCGUCGaggGCGCGCUcacgGCaGCCGGCg -3'
miRNA:   3'- -GCa--GGCAGU---UGCGCGGa---CGcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 40759 0.73 0.149625
Target:  5'- uCG-CCGUUGGCGCGCCgcGCGccgccgaGCCGGCg -3'
miRNA:   3'- -GCaGGCAGUUGCGCGGa-CGC-------CGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 603 0.72 0.162704
Target:  5'- -aUCCGgcgCGGCGCGCg-GCGGCCGacGCg -3'
miRNA:   3'- gcAGGCa--GUUGCGCGgaCGCCGGU--CG- -5'
28106 3' -59.7 NC_005887.1 + 10087 0.72 0.167138
Target:  5'- -uUCCGUCGugugggcggccCGCGCC-GaCGGCCAGCu -3'
miRNA:   3'- gcAGGCAGUu----------GCGCGGaC-GCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 14375 0.72 0.176331
Target:  5'- uGUCggCGUCGGCcuGCGCUUGCGGguUCAGCg -3'
miRNA:   3'- gCAG--GCAGUUG--CGCGGACGCC--GGUCG- -5'
28106 3' -59.7 NC_005887.1 + 23574 0.72 0.181095
Target:  5'- gCGUUCGUCAGCGCgGCCgaacacGuCGGCaAGCa -3'
miRNA:   3'- -GCAGGCAGUUGCG-CGGa-----C-GCCGgUCG- -5'
28106 3' -59.7 NC_005887.1 + 35663 0.72 0.181095
Target:  5'- aCG-CUGUCGacauacagcaGCGCGCgaucgGCGGCCGGCu -3'
miRNA:   3'- -GCaGGCAGU----------UGCGCGga---CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 40748 0.71 0.190461
Target:  5'- aG-CCGUgCGcGCGCGCCaggugcaggauggUGCGGCCGGUg -3'
miRNA:   3'- gCaGGCA-GU-UGCGCGG-------------ACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 15063 0.71 0.190965
Target:  5'- --cUCGggCGGCaCGCCUGCGGCCuGCg -3'
miRNA:   3'- gcaGGCa-GUUGcGCGGACGCCGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.