miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28106 3' -59.7 NC_005887.1 + 26706 0.69 0.29509
Target:  5'- aG-CCGUC-GCGCgGCC-GCGGgCAGCu -3'
miRNA:   3'- gCaGGCAGuUGCG-CGGaCGCCgGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10890 0.71 0.201304
Target:  5'- -aUCCuGUCggUGCaCCUGCaGCCGGCg -3'
miRNA:   3'- gcAGG-CAGuuGCGcGGACGcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 32759 0.71 0.206654
Target:  5'- gCG-CCGgc-GCGCGCCaUGCaGCCGGCu -3'
miRNA:   3'- -GCaGGCaguUGCGCGG-ACGcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 40012 0.7 0.222868
Target:  5'- aCGUCgCGgugcgcaUCAugGCGCggcucgagGCGGCCGGCc -3'
miRNA:   3'- -GCAG-GC-------AGUugCGCGga------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 21811 0.7 0.229296
Target:  5'- aCGUCCG-CGGCGCuGCCggGCGcGCCGa- -3'
miRNA:   3'- -GCAGGCaGUUGCG-CGGa-CGC-CGGUcg -5'
28106 3' -59.7 NC_005887.1 + 14025 0.7 0.229296
Target:  5'- --aCCGcCGGCGCGCC-GcCGGCgCAGCc -3'
miRNA:   3'- gcaGGCaGUUGCGCGGaC-GCCG-GUCG- -5'
28106 3' -59.7 NC_005887.1 + 36408 0.7 0.235274
Target:  5'- gGUCUGguUCAuuuGCGCaccGCCUuccgcGCGGCCGGCu -3'
miRNA:   3'- gCAGGC--AGU---UGCG---CGGA-----CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 41589 0.7 0.247624
Target:  5'- uGUCgGcCAGCgGCgGCCcaggugcgGCGGCCGGCg -3'
miRNA:   3'- gCAGgCaGUUG-CG-CGGa-------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 9039 0.69 0.267148
Target:  5'- aCGUuuGUCGGCG-GCCcguucGCGGCCgugaacAGCg -3'
miRNA:   3'- -GCAggCAGUUGCgCGGa----CGCCGG------UCG- -5'
28106 3' -59.7 NC_005887.1 + 18678 0.71 0.201304
Target:  5'- aGUCuCGUCgAACGUGCaggaUGCGGCgCAGg -3'
miRNA:   3'- gCAG-GCAG-UUGCGCGg---ACGCCG-GUCg -5'
28106 3' -59.7 NC_005887.1 + 35663 0.72 0.181095
Target:  5'- aCG-CUGUCGacauacagcaGCGCGCgaucgGCGGCCGGCu -3'
miRNA:   3'- -GCaGGCAGU----------UGCGCGga---CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10087 0.72 0.167138
Target:  5'- -uUCCGUCGugugggcggccCGCGCC-GaCGGCCAGCu -3'
miRNA:   3'- gcAGGCAGUu----------GCGCGGaC-GCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 11377 0.79 0.051679
Target:  5'- gCGggCGUCAGCGCaGCCggagcgcugGCGGCCGGCg -3'
miRNA:   3'- -GCagGCAGUUGCG-CGGa--------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 34704 0.77 0.077024
Target:  5'- gCGgCCGUCGuCGCGCUUGCGGUgcgCGGCg -3'
miRNA:   3'- -GCaGGCAGUuGCGCGGACGCCG---GUCG- -5'
28106 3' -59.7 NC_005887.1 + 26069 0.76 0.093814
Target:  5'- -cUCCugGUCAGCGCGUCaGCGGCCcGCg -3'
miRNA:   3'- gcAGG--CAGUUGCGCGGaCGCCGGuCG- -5'
28106 3' -59.7 NC_005887.1 + 35321 0.75 0.114031
Target:  5'- uCGcUCCacugCcGCGCGCCgcgGCGGCCGGCc -3'
miRNA:   3'- -GC-AGGca--GuUGCGCGGa--CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 32411 0.74 0.123889
Target:  5'- -uUUCGUCGACGUgGCCggcggcgaUGUGGCCGGCg -3'
miRNA:   3'- gcAGGCAGUUGCG-CGG--------ACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 25003 0.74 0.130894
Target:  5'- cCGagCGUCAGCucGCGCCgGCGGCCgccGGCc -3'
miRNA:   3'- -GCagGCAGUUG--CGCGGaCGCCGG---UCG- -5'
28106 3' -59.7 NC_005887.1 + 14619 0.73 0.14601
Target:  5'- uCGgcgCCGUCGaggGCGCGCUcacgGCaGCCGGCg -3'
miRNA:   3'- -GCa--GGCAGU---UGCGCGGa---CGcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 40759 0.73 0.149625
Target:  5'- uCG-CCGUUGGCGCGCCgcGCGccgccgaGCCGGCg -3'
miRNA:   3'- -GCaGGCAGUUGCGCGGa-CGC-------CGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.