miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28106 3' -59.7 NC_005887.1 + 557 0.68 0.301682
Target:  5'- --cUCGUCGACGaacaGCUgcugcuuUGCGGUCAGCu -3'
miRNA:   3'- gcaGGCAGUUGCg---CGG-------ACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 603 0.72 0.162704
Target:  5'- -aUCCGgcgCGGCGCGCg-GCGGCCGacGCg -3'
miRNA:   3'- gcAGGCa--GUUGCGCGgaCGCCGGU--CG- -5'
28106 3' -59.7 NC_005887.1 + 1086 0.8 0.048376
Target:  5'- uCGUCCGcuUCAagccgguguacagcGCGCGCacgGCGGCCGGCa -3'
miRNA:   3'- -GCAGGC--AGU--------------UGCGCGga-CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 2262 0.67 0.374681
Target:  5'- -aUCgGUUuGCGCuGCCcgaucaccGCGGCCGGCg -3'
miRNA:   3'- gcAGgCAGuUGCG-CGGa-------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 2460 0.66 0.428947
Target:  5'- aCGgcgCCGUCGACgagGCGCUgacGCGGaucaucgaCGGCg -3'
miRNA:   3'- -GCa--GGCAGUUG---CGCGGa--CGCCg-------GUCG- -5'
28106 3' -59.7 NC_005887.1 + 2485 0.67 0.38252
Target:  5'- -aUUCGUCGGCGCgggcuucGCCUcGaaGCCAGCg -3'
miRNA:   3'- gcAGGCAGUUGCG-------CGGA-CgcCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 2779 0.73 0.138262
Target:  5'- aGUCCGUCGucGCGCGgCU-CGGCC-GCu -3'
miRNA:   3'- gCAGGCAGU--UGCGCgGAcGCCGGuCG- -5'
28106 3' -59.7 NC_005887.1 + 2945 0.7 0.235274
Target:  5'- uGUCCGUCGucgccuGCGCguuauccaccGCCUGCGGCauuGGg -3'
miRNA:   3'- gCAGGCAGU------UGCG----------CGGACGCCGg--UCg -5'
28106 3' -59.7 NC_005887.1 + 2999 1.11 0.000185
Target:  5'- uCGUCCGUCAACGCGCCUGCGGCCAGCg -3'
miRNA:   3'- -GCAGGCAGUUGCGCGGACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 3358 0.67 0.392248
Target:  5'- gCGUCCGUCAAgGCGuaCCUGCaGggAGUg -3'
miRNA:   3'- -GCAGGCAGUUgCGC--GGACGcCggUCG- -5'
28106 3' -59.7 NC_005887.1 + 4699 0.67 0.366099
Target:  5'- -aUCC-UUGAuCGCGCCgGCGGCCAccgGCg -3'
miRNA:   3'- gcAGGcAGUU-GCGCGGaCGCCGGU---CG- -5'
28106 3' -59.7 NC_005887.1 + 5589 0.69 0.287897
Target:  5'- --aUCGU--GCGUGCCugcUGCGGCCGGUg -3'
miRNA:   3'- gcaGGCAguUGCGCGG---ACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 9039 0.69 0.267148
Target:  5'- aCGUuuGUCGGCG-GCCcguucGCGGCCgugaacAGCg -3'
miRNA:   3'- -GCAggCAGUUGCgCGGa----CGCCGG------UCG- -5'
28106 3' -59.7 NC_005887.1 + 9250 0.68 0.341177
Target:  5'- gCGUCgG-CGAuCGCGUCUaucugugcacgGCGGUCGGCa -3'
miRNA:   3'- -GCAGgCaGUU-GCGCGGA-----------CGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10025 0.7 0.235274
Target:  5'- uGUCggacgaaaaGUCGuauuugaaaucGCGCaGCUUGCGGCCGGCc -3'
miRNA:   3'- gCAGg--------CAGU-----------UGCG-CGGACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10087 0.72 0.167138
Target:  5'- -uUCCGUCGugugggcggccCGCGCC-GaCGGCCAGCu -3'
miRNA:   3'- gcAGGCAGUu----------GCGCGGaC-GCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10091 0.7 0.241383
Target:  5'- uGUUCGUgcCAGCGCgGCCgcgcgugaUGUGGUCGGCg -3'
miRNA:   3'- gCAGGCA--GUUGCG-CGG--------ACGCCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10161 0.66 0.442262
Target:  5'- uGgCCGUCGGCGCggGCCgcccacacgacggaaUGCGGCUccugcuggaAGCa -3'
miRNA:   3'- gCaGGCAGUUGCG--CGG---------------ACGCCGG---------UCG- -5'
28106 3' -59.7 NC_005887.1 + 10490 0.66 0.414024
Target:  5'- cCGUCgGUCAGacCGCGaCCguaacgccuucgaggUGCccgaGGCCGGCg -3'
miRNA:   3'- -GCAGgCAGUU--GCGC-GG---------------ACG----CCGGUCG- -5'
28106 3' -59.7 NC_005887.1 + 10890 0.71 0.201304
Target:  5'- -aUCCuGUCggUGCaCCUGCaGCCGGCg -3'
miRNA:   3'- gcAGG-CAGuuGCGcGGACGcCGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.