miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28107 3' -54.2 NC_005887.1 + 3565 1.08 0.000877
Target:  5'- aAUUCCGGCCUGAUCGACAAGACGCACg -3'
miRNA:   3'- -UAAGGCCGGACUAGCUGUUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 10276 0.74 0.260471
Target:  5'- -gUCCGGCgCggGcAUCGACGcGACGCACu -3'
miRNA:   3'- uaAGGCCG-Ga-C-UAGCUGUuCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 15749 0.73 0.287158
Target:  5'- -aUCCGGCCgcgcggcggugagcUGGUCGAgCucGGCGCGCa -3'
miRNA:   3'- uaAGGCCGG--------------ACUAGCU-GuuCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 16460 0.72 0.337456
Target:  5'- cUUCCGGCCggcGGccgucUCGACugcauuGACGCACu -3'
miRNA:   3'- uAAGGCCGGa--CU-----AGCUGuu----CUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 16489 0.71 0.372578
Target:  5'- -aUCCGGCgggCUGGUCGGCGAuGuCGCAg -3'
miRNA:   3'- uaAGGCCG---GACUAGCUGUU-CuGCGUg -5'
28107 3' -54.2 NC_005887.1 + 13004 0.71 0.381738
Target:  5'- -gUCgCGGCUUGcugCGGCAgGGACGCGCu -3'
miRNA:   3'- uaAG-GCCGGACua-GCUGU-UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 21390 0.71 0.381738
Target:  5'- --aCCGGCCgaugcGGUCGGCGcgguGGGCGUGCc -3'
miRNA:   3'- uaaGGCCGGa----CUAGCUGU----UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 23251 0.7 0.449893
Target:  5'- --cCCGGCCgUGAUCG-CGAG-CGCGa -3'
miRNA:   3'- uaaGGCCGG-ACUAGCuGUUCuGCGUg -5'
28107 3' -54.2 NC_005887.1 + 27497 0.7 0.449893
Target:  5'- --gCCGGCaUGGgccUCGGCAAGACGguCa -3'
miRNA:   3'- uaaGGCCGgACU---AGCUGUUCUGCguG- -5'
28107 3' -54.2 NC_005887.1 + 27328 0.7 0.449893
Target:  5'- -gUCCGGCCacGUCGACugcgccACGCGCa -3'
miRNA:   3'- uaAGGCCGGacUAGCUGuuc---UGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 26774 0.69 0.460169
Target:  5'- --gUCGGCCgGGUCGAgCGAGAuCGUGCa -3'
miRNA:   3'- uaaGGCCGGaCUAGCU-GUUCU-GCGUG- -5'
28107 3' -54.2 NC_005887.1 + 15572 0.68 0.524226
Target:  5'- -gUCCGGaaaCUGGcCGGCGuccaucuGACGCGCg -3'
miRNA:   3'- uaAGGCCg--GACUaGCUGUu------CUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 7610 0.68 0.546349
Target:  5'- --gCCGGauCCUGAUCGGuCAGGaACGCGu -3'
miRNA:   3'- uaaGGCC--GGACUAGCU-GUUC-UGCGUg -5'
28107 3' -54.2 NC_005887.1 + 9770 0.68 0.546349
Target:  5'- -gUCCGacaGCCugcUGAUCGGCAuGACGgGCg -3'
miRNA:   3'- uaAGGC---CGG---ACUAGCUGUuCUGCgUG- -5'
28107 3' -54.2 NC_005887.1 + 28044 0.68 0.546349
Target:  5'- --gUCGGCgUGAUCGAgcAGGCGCuGCg -3'
miRNA:   3'- uaaGGCCGgACUAGCUguUCUGCG-UG- -5'
28107 3' -54.2 NC_005887.1 + 8167 0.68 0.546349
Target:  5'- --cUCGGCgaGcgCGGCGAGcuGCGCGCg -3'
miRNA:   3'- uaaGGCCGgaCuaGCUGUUC--UGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 37538 0.68 0.557522
Target:  5'- --gCCGcCCUGAUCG-CAuccGGCGCACu -3'
miRNA:   3'- uaaGGCcGGACUAGCuGUu--CUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 2234 0.67 0.580054
Target:  5'- -aUCCGGUCgGAagucgucgCGACGagcauGGGCGCGCg -3'
miRNA:   3'- uaAGGCCGGaCUa-------GCUGU-----UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 2504 0.67 0.580054
Target:  5'- --cCCGGCCUGcUCGuGCAcccGGAcugcCGCACg -3'
miRNA:   3'- uaaGGCCGGACuAGC-UGU---UCU----GCGUG- -5'
28107 3' -54.2 NC_005887.1 + 16419 0.67 0.587988
Target:  5'- -cUCacgcaGGCCgaGAUCGACGGGaucgagaaccgcguGCGCGCg -3'
miRNA:   3'- uaAGg----CCGGa-CUAGCUGUUC--------------UGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.