miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28107 3' -54.2 NC_005887.1 + 2234 0.67 0.580054
Target:  5'- -aUCCGGUCgGAagucgucgCGACGagcauGGGCGCGCg -3'
miRNA:   3'- uaAGGCCGGaCUa-------GCUGU-----UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 2504 0.67 0.580054
Target:  5'- --cCCGGCCUGcUCGuGCAcccGGAcugcCGCACg -3'
miRNA:   3'- uaaGGCCGGACuAGC-UGU---UCU----GCGUG- -5'
28107 3' -54.2 NC_005887.1 + 3565 1.08 0.000877
Target:  5'- aAUUCCGGCCUGAUCGACAAGACGCACg -3'
miRNA:   3'- -UAAGGCCGGACUAGCUGUUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 4017 0.66 0.648448
Target:  5'- ---aCGGCg-GGUCGACGAGcuucuGCGCGCc -3'
miRNA:   3'- uaagGCCGgaCUAGCUGUUC-----UGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 4376 0.67 0.591395
Target:  5'- -gUCCGGCagCUGGccggccUCGGCGAGgaugucgaccucGCGCGCg -3'
miRNA:   3'- uaAGGCCG--GACU------AGCUGUUC------------UGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 4920 0.66 0.682573
Target:  5'- uGUUCgUGcGCCUGAUCcaGAUccucgggauggAAGACGCGCa -3'
miRNA:   3'- -UAAG-GC-CGGACUAG--CUG-----------UUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 5532 0.67 0.625598
Target:  5'- --aUCGGCCUGcGUCGugGuGGAUGCGg -3'
miRNA:   3'- uaaGGCCGGAC-UAGCugU-UCUGCGUg -5'
28107 3' -54.2 NC_005887.1 + 7563 0.66 0.659855
Target:  5'- -aUCCGGCCUcg-UGGC-AGGCGUAUc -3'
miRNA:   3'- uaAGGCCGGAcuaGCUGuUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 7610 0.68 0.546349
Target:  5'- --gCCGGauCCUGAUCGGuCAGGaACGCGu -3'
miRNA:   3'- uaaGGCC--GGACUAGCU-GUUC-UGCGUg -5'
28107 3' -54.2 NC_005887.1 + 8167 0.68 0.546349
Target:  5'- --cUCGGCgaGcgCGGCGAGcuGCGCGCg -3'
miRNA:   3'- uaaGGCCGgaCuaGCUGUUC--UGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 9332 0.67 0.602772
Target:  5'- -gUCCGGUa--GUCGAUggGACgGCACc -3'
miRNA:   3'- uaAGGCCGgacUAGCUGuuCUG-CGUG- -5'
28107 3' -54.2 NC_005887.1 + 9770 0.68 0.546349
Target:  5'- -gUCCGacaGCCugcUGAUCGGCAuGACGgGCg -3'
miRNA:   3'- uaAGGC---CGG---ACUAGCUGUuCUGCgUG- -5'
28107 3' -54.2 NC_005887.1 + 10276 0.74 0.260471
Target:  5'- -gUCCGGCgCggGcAUCGACGcGACGCACu -3'
miRNA:   3'- uaAGGCCG-Ga-C-UAGCUGUuCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 10956 0.66 0.659855
Target:  5'- --gCCGGCUgcaGGUgcacCGACAGGAUGUGCu -3'
miRNA:   3'- uaaGGCCGGa--CUA----GCUGUUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 11031 0.66 0.682573
Target:  5'- -gUCCaGCC-GAUCuGCGuGGACGCGCa -3'
miRNA:   3'- uaAGGcCGGaCUAGcUGU-UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 12598 0.67 0.625598
Target:  5'- --cCCGGCCgcGAcgcUCGGCGugcuGACGCAg -3'
miRNA:   3'- uaaGGCCGGa-CU---AGCUGUu---CUGCGUg -5'
28107 3' -54.2 NC_005887.1 + 12650 0.67 0.625598
Target:  5'- -gUCgCGGCCgGGUCGGC-GGACaccauGCGCa -3'
miRNA:   3'- uaAG-GCCGGaCUAGCUGuUCUG-----CGUG- -5'
28107 3' -54.2 NC_005887.1 + 13004 0.71 0.381738
Target:  5'- -gUCgCGGCUUGcugCGGCAgGGACGCGCu -3'
miRNA:   3'- uaAG-GCCGGACua-GCUGU-UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 13478 0.66 0.671234
Target:  5'- ----aGGCgCUGAagGACAAGACGguCa -3'
miRNA:   3'- uaaggCCG-GACUagCUGUUCUGCguG- -5'
28107 3' -54.2 NC_005887.1 + 13892 0.67 0.614177
Target:  5'- --aCCGGCUcgUGcgcGUCGGCAuucGugGCACg -3'
miRNA:   3'- uaaGGCCGG--AC---UAGCUGUu--CugCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.