miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28107 3' -54.2 NC_005887.1 + 4920 0.66 0.682573
Target:  5'- uGUUCgUGcGCCUGAUCcaGAUccucgggauggAAGACGCGCa -3'
miRNA:   3'- -UAAG-GC-CGGACUAG--CUG-----------UUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 40603 0.67 0.607331
Target:  5'- gGUUCCucgacgagcguguguGGCCgcacAUCGGCAAGACagGCACu -3'
miRNA:   3'- -UAAGG---------------CCGGac--UAGCUGUUCUG--CGUG- -5'
28107 3' -54.2 NC_005887.1 + 13892 0.67 0.614177
Target:  5'- --aCCGGCUcgUGcgcGUCGGCAuucGugGCACg -3'
miRNA:   3'- uaaGGCCGG--AC---UAGCUGUu--CugCGUG- -5'
28107 3' -54.2 NC_005887.1 + 12598 0.67 0.625598
Target:  5'- --cCCGGCCgcGAcgcUCGGCGugcuGACGCAg -3'
miRNA:   3'- uaaGGCCGGa-CU---AGCUGUu---CUGCGUg -5'
28107 3' -54.2 NC_005887.1 + 20875 0.66 0.637025
Target:  5'- ---gCGGCCUGAaUGAU-AGugGCGCc -3'
miRNA:   3'- uaagGCCGGACUaGCUGuUCugCGUG- -5'
28107 3' -54.2 NC_005887.1 + 34631 0.66 0.648448
Target:  5'- -aUUC-GCCguucgcGUCGACGAGGCGCGCc -3'
miRNA:   3'- uaAGGcCGGac----UAGCUGUUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 16914 0.66 0.659855
Target:  5'- --gCCGaGCa-GAUCGGCAAGACgacggGCGCg -3'
miRNA:   3'- uaaGGC-CGgaCUAGCUGUUCUG-----CGUG- -5'
28107 3' -54.2 NC_005887.1 + 7563 0.66 0.659855
Target:  5'- -aUCCGGCCUcg-UGGC-AGGCGUAUc -3'
miRNA:   3'- uaAGGCCGGAcuaGCUGuUCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 13478 0.66 0.671234
Target:  5'- ----aGGCgCUGAagGACAAGACGguCa -3'
miRNA:   3'- uaaggCCG-GACUagCUGUUCUGCguG- -5'
28107 3' -54.2 NC_005887.1 + 9332 0.67 0.602772
Target:  5'- -gUCCGGUa--GUCGAUggGACgGCACc -3'
miRNA:   3'- uaAGGCCGgacUAGCUGuuCUG-CGUG- -5'
28107 3' -54.2 NC_005887.1 + 26715 0.67 0.591395
Target:  5'- ---gCGGCCgcgGGcagcUCGACAuagaccGGGCGCACg -3'
miRNA:   3'- uaagGCCGGa--CU----AGCUGU------UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 22147 0.67 0.591395
Target:  5'- --cUCGGCUUcAUCGGCGAagggcuGACGCGCa -3'
miRNA:   3'- uaaGGCCGGAcUAGCUGUU------CUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 16489 0.71 0.372578
Target:  5'- -aUCCGGCgggCUGGUCGGCGAuGuCGCAg -3'
miRNA:   3'- uaAGGCCG---GACUAGCUGUU-CuGCGUg -5'
28107 3' -54.2 NC_005887.1 + 27328 0.7 0.449893
Target:  5'- -gUCCGGCCacGUCGACugcgccACGCGCa -3'
miRNA:   3'- uaAGGCCGGacUAGCUGuuc---UGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 26774 0.69 0.460169
Target:  5'- --gUCGGCCgGGUCGAgCGAGAuCGUGCa -3'
miRNA:   3'- uaaGGCCGGaCUAGCU-GUUCU-GCGUG- -5'
28107 3' -54.2 NC_005887.1 + 9770 0.68 0.546349
Target:  5'- -gUCCGacaGCCugcUGAUCGGCAuGACGgGCg -3'
miRNA:   3'- uaAGGC---CGG---ACUAGCUGUuCUGCgUG- -5'
28107 3' -54.2 NC_005887.1 + 28044 0.68 0.546349
Target:  5'- --gUCGGCgUGAUCGAgcAGGCGCuGCg -3'
miRNA:   3'- uaaGGCCGgACUAGCUguUCUGCG-UG- -5'
28107 3' -54.2 NC_005887.1 + 2504 0.67 0.580054
Target:  5'- --cCCGGCCUGcUCGuGCAcccGGAcugcCGCACg -3'
miRNA:   3'- uaaGGCCGGACuAGC-UGU---UCU----GCGUG- -5'
28107 3' -54.2 NC_005887.1 + 2234 0.67 0.580054
Target:  5'- -aUCCGGUCgGAagucgucgCGACGagcauGGGCGCGCg -3'
miRNA:   3'- uaAGGCCGGaCUa-------GCUGU-----UCUGCGUG- -5'
28107 3' -54.2 NC_005887.1 + 16419 0.67 0.587988
Target:  5'- -cUCacgcaGGCCgaGAUCGACGGGaucgagaaccgcguGCGCGCg -3'
miRNA:   3'- uaAGg----CCGGa-CUAGCUGUUC--------------UGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.