miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28107 5' -60.6 NC_005887.1 + 3600 1.08 0.000224
Target:  5'- gGAGCUCACGUUGCGCCAGGCCGCGCAg -3'
miRNA:   3'- -CUCGAGUGCAACGCGGUCCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 32748 0.74 0.091001
Target:  5'- -cGCUCGCGUgcGCGCC-GGCgCGCGCc -3'
miRNA:   3'- cuCGAGUGCAa-CGCGGuCCG-GCGCGu -5'
28107 5' -60.6 NC_005887.1 + 28538 0.74 0.099085
Target:  5'- -cGCUCACGc-GCGCCGGGCUGCu-- -3'
miRNA:   3'- cuCGAGUGCaaCGCGGUCCGGCGcgu -5'
28107 5' -60.6 NC_005887.1 + 1497 0.72 0.124069
Target:  5'- -cGCUCGCGcgGCGC--GGCCGUGCGg -3'
miRNA:   3'- cuCGAGUGCaaCGCGguCCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 6878 0.71 0.142536
Target:  5'- -cGC-CACGUaGCGCCA-GUCGCGCAg -3'
miRNA:   3'- cuCGaGUGCAaCGCGGUcCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 16016 0.7 0.182199
Target:  5'- cAGCg-GCGUgcgGCGCguGGCCGgCGCAu -3'
miRNA:   3'- cUCGagUGCAa--CGCGguCCGGC-GCGU- -5'
28107 5' -60.6 NC_005887.1 + 14976 0.7 0.187165
Target:  5'- -cGCcUACGccGCG-CAGGCCGCGCAg -3'
miRNA:   3'- cuCGaGUGCaaCGCgGUCCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 15936 0.7 0.187165
Target:  5'- cGAGCUgCugG-UGCGCCu-GCUGCGCGc -3'
miRNA:   3'- -CUCGA-GugCaACGCGGucCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 5905 0.7 0.192249
Target:  5'- cGAGCUCG-GU--CGCCAGGCgaUGCGCAa -3'
miRNA:   3'- -CUCGAGUgCAacGCGGUCCG--GCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 33766 0.69 0.202782
Target:  5'- cGAGCaucuggCGCGgcGUGCCGGGCUuccaccaaGCGCGg -3'
miRNA:   3'- -CUCGa-----GUGCaaCGCGGUCCGG--------CGCGU- -5'
28107 5' -60.6 NC_005887.1 + 26416 0.69 0.207684
Target:  5'- cGAGCUgGCGgccGCGCgGGaacgcgcgcugcaGCCGCGCGa -3'
miRNA:   3'- -CUCGAgUGCaa-CGCGgUC-------------CGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 34472 0.69 0.208235
Target:  5'- cGAGCUCGacUGaUUGCagGCCGGGCCuCGCGc -3'
miRNA:   3'- -CUCGAGU--GC-AACG--CGGUCCGGcGCGU- -5'
28107 5' -60.6 NC_005887.1 + 1906 0.69 0.213813
Target:  5'- aGGGCUaCGCGUUcuuucgGCaGCCGGGCgGCGUc -3'
miRNA:   3'- -CUCGA-GUGCAA------CG-CGGUCCGgCGCGu -5'
28107 5' -60.6 NC_005887.1 + 11123 0.69 0.219519
Target:  5'- aAGCUgGCcgagGCGCCGuGGCgGCGCAu -3'
miRNA:   3'- cUCGAgUGcaa-CGCGGU-CCGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 4582 0.69 0.219519
Target:  5'- aAGC-CGCcgagGCG-CAGGCCGCGCAg -3'
miRNA:   3'- cUCGaGUGcaa-CGCgGUCCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 41957 0.69 0.225354
Target:  5'- -uGCUCGCGUgGUGCguGcGCgGCGCGc -3'
miRNA:   3'- cuCGAGUGCAaCGCGguC-CGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 41677 0.69 0.225354
Target:  5'- --cCUCACGggccGCGCC-GGCCGcCGCAc -3'
miRNA:   3'- cucGAGUGCaa--CGCGGuCCGGC-GCGU- -5'
28107 5' -60.6 NC_005887.1 + 30937 0.68 0.23742
Target:  5'- cGAGCUCGCGcucugGCaUCAGGaCCaGCGCAu -3'
miRNA:   3'- -CUCGAGUGCaa---CGcGGUCC-GG-CGCGU- -5'
28107 5' -60.6 NC_005887.1 + 42081 0.68 0.250022
Target:  5'- cGAGCgcugUCGCGUgggGCGCgAuGCCGCGUc -3'
miRNA:   3'- -CUCG----AGUGCAa--CGCGgUcCGGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 14695 0.68 0.256528
Target:  5'- cGGGCUCGuCGcgGCgGgCGGGCCGgGCGc -3'
miRNA:   3'- -CUCGAGU-GCaaCG-CgGUCCGGCgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.