miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28107 5' -60.6 NC_005887.1 + 801 0.66 0.362424
Target:  5'- cGAGCUCGCGaucGCgaucaacaGCCAuGCuCGCGCGa -3'
miRNA:   3'- -CUCGAGUGCaa-CG--------CGGUcCG-GCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 1497 0.72 0.124069
Target:  5'- -cGCUCGCGcgGCGC--GGCCGUGCGg -3'
miRNA:   3'- cuCGAGUGCaaCGCGguCCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 1906 0.69 0.213813
Target:  5'- aGGGCUaCGCGUUcuuucgGCaGCCGGGCgGCGUc -3'
miRNA:   3'- -CUCGA-GUGCAA------CG-CGGUCCGgCGCGu -5'
28107 5' -60.6 NC_005887.1 + 3600 1.08 0.000224
Target:  5'- gGAGCUCACGUUGCGCCAGGCCGCGCAg -3'
miRNA:   3'- -CUCGAGUGCAACGCGGUCCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 4237 0.66 0.345585
Target:  5'- -uGCUCGCGccGaCGCUcGGCCGCacGCAg -3'
miRNA:   3'- cuCGAGUGCaaC-GCGGuCCGGCG--CGU- -5'
28107 5' -60.6 NC_005887.1 + 4582 0.69 0.219519
Target:  5'- aAGC-CGCcgagGCG-CAGGCCGCGCAg -3'
miRNA:   3'- cUCGaGUGcaa-CGCgGUCCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 4618 0.67 0.276876
Target:  5'- -uGCUCGCcGcgGCGCCGguGGCCGCcgGCGc -3'
miRNA:   3'- cuCGAGUG-CaaCGCGGU--CCGGCG--CGU- -5'
28107 5' -60.6 NC_005887.1 + 4884 0.68 0.263171
Target:  5'- -cGCUCGCGacgaugGuCGCCgaGGGCCgGCGCGa -3'
miRNA:   3'- cuCGAGUGCaa----C-GCGG--UCCGG-CGCGU- -5'
28107 5' -60.6 NC_005887.1 + 5497 0.66 0.329315
Target:  5'- cAGCgggCGCGUggucGCGCC-GGUCGCuGCGg -3'
miRNA:   3'- cUCGa--GUGCAa---CGCGGuCCGGCG-CGU- -5'
28107 5' -60.6 NC_005887.1 + 5698 0.67 0.298493
Target:  5'- cGAGCUCGCGUauCGCCuucaCCGCGUc -3'
miRNA:   3'- -CUCGAGUGCAacGCGGucc-GGCGCGu -5'
28107 5' -60.6 NC_005887.1 + 5905 0.7 0.192249
Target:  5'- cGAGCUCG-GU--CGCCAGGCgaUGCGCAa -3'
miRNA:   3'- -CUCGAGUgCAacGCGGUCCG--GCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 6878 0.71 0.142536
Target:  5'- -cGC-CACGUaGCGCCA-GUCGCGCAg -3'
miRNA:   3'- cuCGaGUGCAaCGCGGUcCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 8527 0.67 0.290418
Target:  5'- cGAGCg---GUUGCGCCGGGCgcucgauCGCGUu -3'
miRNA:   3'- -CUCGagugCAACGCGGUCCG-------GCGCGu -5'
28107 5' -60.6 NC_005887.1 + 10097 0.67 0.305984
Target:  5'- -uGC-CGCuGUUcGUGCCAgcgcGGCCGCGCGu -3'
miRNA:   3'- cuCGaGUG-CAA-CGCGGU----CCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 11123 0.69 0.219519
Target:  5'- aAGCUgGCcgagGCGCCGuGGCgGCGCAu -3'
miRNA:   3'- cUCGAgUGcaa-CGCGGU-CCGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 11514 0.67 0.283227
Target:  5'- cGAGCUgCGCGUUGCGauCCAugaucgcGGCCuguuGCGCu -3'
miRNA:   3'- -CUCGA-GUGCAACGC--GGU-------CCGG----CGCGu -5'
28107 5' -60.6 NC_005887.1 + 12702 0.66 0.362424
Target:  5'- aGGgUCACGc-GCGCacgcuGGUCGCGCAg -3'
miRNA:   3'- cUCgAGUGCaaCGCGgu---CCGGCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 14099 0.66 0.337379
Target:  5'- -cGuCUCAgGcUGCGCC-GGCgGCGCGc -3'
miRNA:   3'- cuC-GAGUgCaACGCGGuCCGgCGCGU- -5'
28107 5' -60.6 NC_005887.1 + 14295 0.66 0.353934
Target:  5'- -cGCUCACGcUGaacccgcaaGCgCAGGCCGaCGCc -3'
miRNA:   3'- cuCGAGUGCaACg--------CG-GUCCGGC-GCGu -5'
28107 5' -60.6 NC_005887.1 + 14695 0.68 0.256528
Target:  5'- cGGGCUCGuCGcgGCgGgCGGGCCGgGCGc -3'
miRNA:   3'- -CUCGAGU-GCaaCG-CgGUCCGGCgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.