Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 19184 | 0.66 | 0.329315 |
Target: 5'- uGAGCggCGCGg-GCGUggagaCAGGCgGCGCGg -3' miRNA: 3'- -CUCGa-GUGCaaCGCG-----GUCCGgCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 42081 | 0.68 | 0.250022 |
Target: 5'- cGAGCgcugUCGCGUgggGCGCgAuGCCGCGUc -3' miRNA: 3'- -CUCG----AGUGCAa--CGCGgUcCGGCGCGu -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 14695 | 0.68 | 0.256528 |
Target: 5'- cGGGCUCGuCGcgGCgGgCGGGCCGgGCGc -3' miRNA: 3'- -CUCGAGU-GCaaCG-CgGUCCGGCgCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 4884 | 0.68 | 0.263171 |
Target: 5'- -cGCUCGCGacgaugGuCGCCgaGGGCCgGCGCGa -3' miRNA: 3'- cuCGAGUGCaa----C-GCGG--UCCGG-CGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 32540 | 0.67 | 0.267904 |
Target: 5'- cGGC-CACG-UGUGCCAGGCuuucaccgcguucuCGCGCc -3' miRNA: 3'- cUCGaGUGCaACGCGGUCCG--------------GCGCGu -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 24420 | 0.67 | 0.269954 |
Target: 5'- cGAGCUCGuuCG-UGCGCacgCAGGUCGCGa- -3' miRNA: 3'- -CUCGAGU--GCaACGCG---GUCCGGCGCgu -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 4618 | 0.67 | 0.276876 |
Target: 5'- -uGCUCGCcGcgGCGCCGguGGCCGCcgGCGc -3' miRNA: 3'- cuCGAGUG-CaaCGCGGU--CCGGCG--CGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 34270 | 0.67 | 0.305984 |
Target: 5'- -cGCUCGCGgcuUGCGCaugccgucGCCGUGCGg -3' miRNA: 3'- cuCGAGUGCa--ACGCGguc-----CGGCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 29861 | 0.66 | 0.313617 |
Target: 5'- aGGCgaugaaCACGUccUGCGgCAGGCCGaGCGu -3' miRNA: 3'- cUCGa-----GUGCA--ACGCgGUCCGGCgCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 41957 | 0.69 | 0.225354 |
Target: 5'- -uGCUCGCGUgGUGCguGcGCgGCGCGc -3' miRNA: 3'- cuCGAGUGCAaCGCGguC-CGgCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 11123 | 0.69 | 0.219519 |
Target: 5'- aAGCUgGCcgagGCGCCGuGGCgGCGCAu -3' miRNA: 3'- cUCGAgUGcaa-CGCGGU-CCGgCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 4582 | 0.69 | 0.219519 |
Target: 5'- aAGC-CGCcgagGCG-CAGGCCGCGCAg -3' miRNA: 3'- cUCGaGUGcaa-CGCgGUCCGGCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 32748 | 0.74 | 0.091001 |
Target: 5'- -cGCUCGCGUgcGCGCC-GGCgCGCGCc -3' miRNA: 3'- cuCGAGUGCAa-CGCGGuCCG-GCGCGu -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 28538 | 0.74 | 0.099085 |
Target: 5'- -cGCUCACGc-GCGCCGGGCUGCu-- -3' miRNA: 3'- cuCGAGUGCaaCGCGGUCCGGCGcgu -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 1497 | 0.72 | 0.124069 |
Target: 5'- -cGCUCGCGcgGCGC--GGCCGUGCGg -3' miRNA: 3'- cuCGAGUGCaaCGCGguCCGGCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 14976 | 0.7 | 0.187165 |
Target: 5'- -cGCcUACGccGCG-CAGGCCGCGCAg -3' miRNA: 3'- cuCGaGUGCaaCGCgGUCCGGCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 5905 | 0.7 | 0.192249 |
Target: 5'- cGAGCUCG-GU--CGCCAGGCgaUGCGCAa -3' miRNA: 3'- -CUCGAGUgCAacGCGGUCCG--GCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 33766 | 0.69 | 0.202782 |
Target: 5'- cGAGCaucuggCGCGgcGUGCCGGGCUuccaccaaGCGCGg -3' miRNA: 3'- -CUCGa-----GUGCaaCGCGGUCCGG--------CGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 26416 | 0.69 | 0.207684 |
Target: 5'- cGAGCUgGCGgccGCGCgGGaacgcgcgcugcaGCCGCGCGa -3' miRNA: 3'- -CUCGAgUGCaa-CGCGgUC-------------CGGCGCGU- -5' |
|||||||
28107 | 5' | -60.6 | NC_005887.1 | + | 1906 | 0.69 | 0.213813 |
Target: 5'- aGGGCUaCGCGUUcuuucgGCaGCCGGGCgGCGUc -3' miRNA: 3'- -CUCGA-GUGCAA------CG-CGGUCCGgCGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home