miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28109 5' -60.8 NC_005887.1 + 14082 0.66 0.366508
Target:  5'- -gCGGCgcgCCGGCgGuuGCGGAGGcGCg -3'
miRNA:   3'- aaGCUG---GGCCGaCggCGCUUCCaCGg -5'
28109 5' -60.8 NC_005887.1 + 16334 0.66 0.366508
Target:  5'- gUCGAUCU-GCUGCaucagcucgGCGAcGGUGCCc -3'
miRNA:   3'- aAGCUGGGcCGACGg--------CGCUuCCACGG- -5'
28109 5' -60.8 NC_005887.1 + 31394 0.66 0.358027
Target:  5'- -aCGGCCCGGUcgGCaCGUGGGacgugaccaccGGUGCg -3'
miRNA:   3'- aaGCUGGGCCGa-CG-GCGCUU-----------CCACGg -5'
28109 5' -60.8 NC_005887.1 + 18979 0.66 0.358027
Target:  5'- --aGAUUCGGUgagcGCUGCGGGcugccGGUGCCg -3'
miRNA:   3'- aagCUGGGCCGa---CGGCGCUU-----CCACGG- -5'
28109 5' -60.8 NC_005887.1 + 14612 0.66 0.349684
Target:  5'- -aCGGCCguCGGC-GCCGuCGAGGGcGCg -3'
miRNA:   3'- aaGCUGG--GCCGaCGGC-GCUUCCaCGg -5'
28109 5' -60.8 NC_005887.1 + 28597 0.66 0.341481
Target:  5'- ---aGCCCGGC-GCgCGUGAGcGUGCCu -3'
miRNA:   3'- aagcUGGGCCGaCG-GCGCUUcCACGG- -5'
28109 5' -60.8 NC_005887.1 + 40253 0.66 0.340669
Target:  5'- cUUCGGCaauauguUCGuGCUGCCGCuggccggcaaGucGGUGCCg -3'
miRNA:   3'- -AAGCUG-------GGC-CGACGGCG----------CuuCCACGG- -5'
28109 5' -60.8 NC_005887.1 + 23004 0.66 0.338239
Target:  5'- aUCGACgCCGGUcGCUucugcgaggcggugGCGAAGGUaucgaacguauggGCCa -3'
miRNA:   3'- aAGCUG-GGCCGaCGG--------------CGCUUCCA-------------CGG- -5'
28109 5' -60.8 NC_005887.1 + 38285 0.66 0.33262
Target:  5'- -cCGGCCacgcgcaaGGCUGCgCGCGAcuggcucGGGUauugaGCCg -3'
miRNA:   3'- aaGCUGGg-------CCGACG-GCGCU-------UCCA-----CGG- -5'
28109 5' -60.8 NC_005887.1 + 12173 0.66 0.33262
Target:  5'- -gUGACgUGGCUGCagaacaugcagacCGCGAAGGacagcGCCg -3'
miRNA:   3'- aaGCUGgGCCGACG-------------GCGCUUCCa----CGG- -5'
28109 5' -60.8 NC_005887.1 + 9436 0.66 0.331823
Target:  5'- aUCGACCCGuauucguCUGUCGCcGAuucguccugcccGGUGCCg -3'
miRNA:   3'- aAGCUGGGCc------GACGGCG-CUu-----------CCACGG- -5'
28109 5' -60.8 NC_005887.1 + 21881 0.66 0.325496
Target:  5'- aUUCGgcgcGCCCGGCagcGCCGCGGAcGUcguguugauGCCg -3'
miRNA:   3'- -AAGC----UGGGCCGa--CGGCGCUUcCA---------CGG- -5'
28109 5' -60.8 NC_005887.1 + 13093 0.66 0.325496
Target:  5'- cUCGAUCgCGGagUGCUGCaGGGcGUGCCg -3'
miRNA:   3'- aAGCUGG-GCCg-ACGGCGcUUC-CACGG- -5'
28109 5' -60.8 NC_005887.1 + 21103 0.67 0.317714
Target:  5'- aUCGGCgCGGUcGCCGCaaacacGGUGCUc -3'
miRNA:   3'- aAGCUGgGCCGaCGGCGcuu---CCACGG- -5'
28109 5' -60.8 NC_005887.1 + 17823 0.67 0.295213
Target:  5'- cUUCGaACCgGGCgccaucaGCCGCGcGGccGUGCCg -3'
miRNA:   3'- -AAGC-UGGgCCGa------CGGCGCuUC--CACGG- -5'
28109 5' -60.8 NC_005887.1 + 42076 0.67 0.295213
Target:  5'- aUCGACgaGcGCUGUCGCGuGGGgcgcgaUGCCg -3'
miRNA:   3'- aAGCUGggC-CGACGGCGCuUCC------ACGG- -5'
28109 5' -60.8 NC_005887.1 + 15631 0.67 0.287993
Target:  5'- -gCGGCCgGGCUcGCCGaucAGGGcGCCg -3'
miRNA:   3'- aaGCUGGgCCGA-CGGCgc-UUCCaCGG- -5'
28109 5' -60.8 NC_005887.1 + 27043 0.67 0.280213
Target:  5'- -gCGACCgCGcacGCUGCCGCccgacuucuucacGAAcucGGUGCCg -3'
miRNA:   3'- aaGCUGG-GC---CGACGGCG-------------CUU---CCACGG- -5'
28109 5' -60.8 NC_005887.1 + 12594 0.68 0.273972
Target:  5'- -cCGACCCGGCcGCgaCGCucGGcGUGCUg -3'
miRNA:   3'- aaGCUGGGCCGaCG--GCGcuUC-CACGG- -5'
28109 5' -60.8 NC_005887.1 + 26414 0.68 0.267169
Target:  5'- gUCGAgCUGGCgGCCGCGcGGGaacGCg -3'
miRNA:   3'- aAGCUgGGCCGaCGGCGCuUCCa--CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.