miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 4605 1.08 0.000604
Target:  5'- cAGAUGCAACAGAUGCUCGCCGCGGCGc -3'
miRNA:   3'- -UCUACGUUGUCUACGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 18574 0.77 0.117858
Target:  5'- ---gGCGACA--UGCUCGUCGCGGCGu -3'
miRNA:   3'- ucuaCGUUGUcuACGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 7478 0.75 0.147893
Target:  5'- aGGcgGCGGCGGGUGCga-CCGUGGCGa -3'
miRNA:   3'- -UCuaCGUUGUCUACGagcGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 33363 0.74 0.174834
Target:  5'- cGAcUGCAGCGGAUGUgcacgCGCCggcGCGGCa -3'
miRNA:   3'- uCU-ACGUUGUCUACGa----GCGG---CGCCGc -5'
28110 3' -56.4 NC_005887.1 + 5515 0.73 0.23193
Target:  5'- uGGAUGCGGCAGGagugccagcggGCgcguggucgcgccggUCGCUGCGGCGc -3'
miRNA:   3'- -UCUACGUUGUCUa----------CG---------------AGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 8687 0.72 0.24847
Target:  5'- cGAcGguGCAGGgcccgGCgaucCGCCGCGGCGg -3'
miRNA:   3'- uCUaCguUGUCUa----CGa---GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 33712 0.71 0.268753
Target:  5'- uGgcGCGGCGGucgaucUGCUCGaUCGCGGCGa -3'
miRNA:   3'- uCuaCGUUGUCu-----ACGAGC-GGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 34311 0.71 0.271556
Target:  5'- gGGcgGCAACGGGUaGCgagaaaggguuuugUGCCGUGGCGc -3'
miRNA:   3'- -UCuaCGUUGUCUA-CGa-------------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 29163 0.71 0.275805
Target:  5'- cAGGUaGUAGCGGAUGuCUUGCUGCGcuGCGa -3'
miRNA:   3'- -UCUA-CGUUGUCUAC-GAGCGGCGC--CGC- -5'
28110 3' -56.4 NC_005887.1 + 25491 0.71 0.283003
Target:  5'- ---cGCAGCGGcgGCUCGgacgauggCGCGGCGg -3'
miRNA:   3'- ucuaCGUUGUCuaCGAGCg-------GCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 4694 0.71 0.283003
Target:  5'- uGAUcGCGcCGGcgGCcaccggCGCCGCGGCGa -3'
miRNA:   3'- uCUA-CGUuGUCuaCGa-----GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 41534 0.71 0.29035
Target:  5'- gGGAUGaugAGCAGAUcCUCG-CGCGGCGu -3'
miRNA:   3'- -UCUACg--UUGUCUAcGAGCgGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 23447 0.7 0.310931
Target:  5'- cAGcgGCAGCGcGAgcagcaaaagcaucUGCgagCGCCGCGGUGc -3'
miRNA:   3'- -UCuaCGUUGU-CU--------------ACGa--GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 10177 0.7 0.329323
Target:  5'- -cGUGCAGCcGAUcaGCUgGCCGuCGGCGc -3'
miRNA:   3'- ucUACGUUGuCUA--CGAgCGGC-GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 34031 0.7 0.351921
Target:  5'- cGGUGCuGACGGAcgccgcacgcgacgUGCUCGCCGagcgccguCGGCa -3'
miRNA:   3'- uCUACG-UUGUCU--------------ACGAGCGGC--------GCCGc -5'
28110 3' -56.4 NC_005887.1 + 13011 0.7 0.354499
Target:  5'- --cUGUAGCGucGcgGCUUGCUGCGGCa -3'
miRNA:   3'- ucuACGUUGU--CuaCGAGCGGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 13475 0.7 0.354499
Target:  5'- ---cGCAGCAGcgGCUUGCCGCcGaCGu -3'
miRNA:   3'- ucuaCGUUGUCuaCGAGCGGCGcC-GC- -5'
28110 3' -56.4 NC_005887.1 + 15623 0.69 0.363188
Target:  5'- ---cGCAGCAGGcggccggGCUCGCCGaucagGGCGc -3'
miRNA:   3'- ucuaCGUUGUCUa------CGAGCGGCg----CCGC- -5'
28110 3' -56.4 NC_005887.1 + 14681 0.69 0.372023
Target:  5'- --cUGCcccGCAcGAUcggGCUCGUCGCGGCGg -3'
miRNA:   3'- ucuACGu--UGU-CUA---CGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 14306 0.69 0.380099
Target:  5'- cGGcgGCAAgauCGGAUGCcgCGCCgaacagcGCGGCGc -3'
miRNA:   3'- -UCuaCGUU---GUCUACGa-GCGG-------CGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.