miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 483 0.66 0.542169
Target:  5'- ---aGCAACAGcgGg-CGgCGCGGCGc -3'
miRNA:   3'- ucuaCGUUGUCuaCgaGCgGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 815 0.69 0.390128
Target:  5'- cGAU-CAACAGccAUGCUCGCgcgauCGCGGCc -3'
miRNA:   3'- uCUAcGUUGUC--UACGAGCG-----GCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 1420 0.67 0.520513
Target:  5'- aGGAUGUAGCGcucGAgcguCUCGCCcuGCGGCu -3'
miRNA:   3'- -UCUACGUUGU---CUac--GAGCGG--CGCCGc -5'
28110 3' -56.4 NC_005887.1 + 2565 0.68 0.417381
Target:  5'- cGGGUGCAcgaGCAGGccggGCUCGCCGuCGaugauccGCGu -3'
miRNA:   3'- -UCUACGU---UGUCUa---CGAGCGGC-GC-------CGC- -5'
28110 3' -56.4 NC_005887.1 + 3041 0.67 0.477257
Target:  5'- aAGAaGCGACGGAcGUggagUCGCCggcgaggauggucGCGGCGg -3'
miRNA:   3'- -UCUaCGUUGUCUaCG----AGCGG-------------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 3386 0.67 0.467997
Target:  5'- uGGUGC-GCAcGcUGUUCGCCGCGcGCu -3'
miRNA:   3'- uCUACGuUGU-CuACGAGCGGCGC-CGc -5'
28110 3' -56.4 NC_005887.1 + 3871 0.67 0.49604
Target:  5'- aAGGUGCGaaagccgcuguucuGCAcGAUGCg-GUCGCGGCc -3'
miRNA:   3'- -UCUACGU--------------UGU-CUACGagCGGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 4485 0.66 0.535639
Target:  5'- aAGGUGCcgAACGGcGcgcgcaucgcgcgucUGCUCGCCGacuaCGGCGg -3'
miRNA:   3'- -UCUACG--UUGUC-U---------------ACGAGCGGC----GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 4605 1.08 0.000604
Target:  5'- cAGAUGCAACAGAUGCUCGCCGCGGCGc -3'
miRNA:   3'- -UCUACGUUGUCUACGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 4694 0.71 0.283003
Target:  5'- uGAUcGCGcCGGcgGCcaccggCGCCGCGGCGa -3'
miRNA:   3'- uCUA-CGUuGUCuaCGa-----GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 4888 0.66 0.575178
Target:  5'- ---cGCGAC-GAUGgUCGCCGagggcCGGCGc -3'
miRNA:   3'- ucuaCGUUGuCUACgAGCGGC-----GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 5515 0.73 0.23193
Target:  5'- uGGAUGCGGCAGGagugccagcggGCgcguggucgcgccggUCGCUGCGGCGc -3'
miRNA:   3'- -UCUACGUUGUCUa----------CG---------------AGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 5575 0.67 0.520513
Target:  5'- --cUGCGGCcGGUGCUgcggccggUGCUGCGGCc -3'
miRNA:   3'- ucuACGUUGuCUACGA--------GCGGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 7478 0.75 0.147893
Target:  5'- aGGcgGCGGCGGGUGCga-CCGUGGCGa -3'
miRNA:   3'- -UCuaCGUUGUCUACGagcGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 8687 0.72 0.24847
Target:  5'- cGAcGguGCAGGgcccgGCgaucCGCCGCGGCGg -3'
miRNA:   3'- uCUaCguUGUCUa----CGa---GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 8781 0.69 0.399393
Target:  5'- uGGccGCGAC-GAaGCgcuuacCGCCGCGGCGg -3'
miRNA:   3'- -UCuaCGUUGuCUaCGa-----GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 10177 0.7 0.329323
Target:  5'- -cGUGCAGCcGAUcaGCUgGCCGuCGGCGc -3'
miRNA:   3'- ucUACGUUGuCUA--CGAgCGGC-GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 10508 0.67 0.520513
Target:  5'- ---cGCGAUGGGUGCacugCGCCGuCGGUc -3'
miRNA:   3'- ucuaCGUUGUCUACGa---GCGGC-GCCGc -5'
28110 3' -56.4 NC_005887.1 + 10998 0.66 0.55311
Target:  5'- aGGAUG--GCGuGGUGCUCgGgUGCGGCGg -3'
miRNA:   3'- -UCUACguUGU-CUACGAG-CgGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 11112 0.66 0.575178
Target:  5'- uGGUGC-GCGcGAaGCUggccgaggCGCCGUGGCGg -3'
miRNA:   3'- uCUACGuUGU-CUaCGA--------GCGGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.