miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 4485 0.66 0.535639
Target:  5'- aAGGUGCcgAACGGcGcgcgcaucgcgcgucUGCUCGCCGacuaCGGCGg -3'
miRNA:   3'- -UCUACG--UUGUC-U---------------ACGAGCGGC----GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 14488 0.68 0.408799
Target:  5'- ---cGC-GCAGAucgUGCcCGCCGCGGUGc -3'
miRNA:   3'- ucuaCGuUGUCU---ACGaGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 16507 0.68 0.418341
Target:  5'- cGAUGUcGCAGGccgaucGCgUCGCCGCcGGCGc -3'
miRNA:   3'- uCUACGuUGUCUa-----CG-AGCGGCG-CCGC- -5'
28110 3' -56.4 NC_005887.1 + 23365 0.68 0.4251
Target:  5'- cGcgGCGcucGCAGAUGCUuuugcugcucgcgcUGCCGCuGGCa -3'
miRNA:   3'- uCuaCGU---UGUCUACGA--------------GCGGCG-CCGc -5'
28110 3' -56.4 NC_005887.1 + 21273 0.68 0.437825
Target:  5'- ---cGCGGCGGcgGCguaugCGCUGCuGGCGu -3'
miRNA:   3'- ucuaCGUUGUCuaCGa----GCGGCG-CCGC- -5'
28110 3' -56.4 NC_005887.1 + 30235 0.68 0.441784
Target:  5'- cGAUGUucGACAGGUcggacacguacaggcGCUUGCCGUccGGCGc -3'
miRNA:   3'- uCUACG--UUGUCUA---------------CGAGCGGCG--CCGC- -5'
28110 3' -56.4 NC_005887.1 + 3386 0.67 0.467997
Target:  5'- uGGUGC-GCAcGcUGUUCGCCGCGcGCu -3'
miRNA:   3'- uCUACGuUGU-CuACGAGCGGCGC-CGc -5'
28110 3' -56.4 NC_005887.1 + 15822 0.67 0.478291
Target:  5'- cGAgGC-GCAGGUGCagCGCuugCGCGGCGc -3'
miRNA:   3'- uCUaCGuUGUCUACGa-GCG---GCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 33144 0.67 0.499204
Target:  5'- uAGAaGCAGCcGAccg-UGCCGCGGCGg -3'
miRNA:   3'- -UCUaCGUUGuCUacgaGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 41993 0.69 0.403139
Target:  5'- ---aGCAGCAcGGccUGCggcccacgucgagugUCGCCGCGGCGc -3'
miRNA:   3'- ucuaCGUUGU-CU--ACG---------------AGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 815 0.69 0.390128
Target:  5'- cGAU-CAACAGccAUGCUCGCgcgauCGCGGCc -3'
miRNA:   3'- uCUAcGUUGUC--UACGAGCG-----GCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 14681 0.69 0.372023
Target:  5'- --cUGCcccGCAcGAUcggGCUCGUCGCGGCGg -3'
miRNA:   3'- ucuACGu--UGU-CUA---CGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 18574 0.77 0.117858
Target:  5'- ---gGCGACA--UGCUCGUCGCGGCGu -3'
miRNA:   3'- ucuaCGUUGUcuACGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 33363 0.74 0.174834
Target:  5'- cGAcUGCAGCGGAUGUgcacgCGCCggcGCGGCa -3'
miRNA:   3'- uCU-ACGUUGUCUACGa----GCGG---CGCCGc -5'
28110 3' -56.4 NC_005887.1 + 8687 0.72 0.24847
Target:  5'- cGAcGguGCAGGgcccgGCgaucCGCCGCGGCGg -3'
miRNA:   3'- uCUaCguUGUCUa----CGa---GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 33712 0.71 0.268753
Target:  5'- uGgcGCGGCGGucgaucUGCUCGaUCGCGGCGa -3'
miRNA:   3'- uCuaCGUUGUCu-----ACGAGC-GGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 34311 0.71 0.271556
Target:  5'- gGGcgGCAACGGGUaGCgagaaaggguuuugUGCCGUGGCGc -3'
miRNA:   3'- -UCuaCGUUGUCUA-CGa-------------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 29163 0.71 0.275805
Target:  5'- cAGGUaGUAGCGGAUGuCUUGCUGCGcuGCGa -3'
miRNA:   3'- -UCUA-CGUUGUCUAC-GAGCGGCGC--CGC- -5'
28110 3' -56.4 NC_005887.1 + 25491 0.71 0.283003
Target:  5'- ---cGCAGCGGcgGCUCGgacgauggCGCGGCGg -3'
miRNA:   3'- ucuaCGUUGUCuaCGAGCg-------GCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 15623 0.69 0.363188
Target:  5'- ---cGCAGCAGGcggccggGCUCGCCGaucagGGCGc -3'
miRNA:   3'- ucuaCGUUGUCUa------CGAGCGGCg----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.