Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28110 | 3' | -56.4 | NC_005887.1 | + | 33712 | 0.71 | 0.268753 |
Target: 5'- uGgcGCGGCGGucgaucUGCUCGaUCGCGGCGa -3' miRNA: 3'- uCuaCGUUGUCu-----ACGAGC-GGCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 34311 | 0.71 | 0.271556 |
Target: 5'- gGGcgGCAACGGGUaGCgagaaaggguuuugUGCCGUGGCGc -3' miRNA: 3'- -UCuaCGUUGUCUA-CGa-------------GCGGCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 29163 | 0.71 | 0.275805 |
Target: 5'- cAGGUaGUAGCGGAUGuCUUGCUGCGcuGCGa -3' miRNA: 3'- -UCUA-CGUUGUCUAC-GAGCGGCGC--CGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 25491 | 0.71 | 0.283003 |
Target: 5'- ---cGCAGCGGcgGCUCGgacgauggCGCGGCGg -3' miRNA: 3'- ucuaCGUUGUCuaCGAGCg-------GCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 14488 | 0.68 | 0.408799 |
Target: 5'- ---cGC-GCAGAucgUGCcCGCCGCGGUGc -3' miRNA: 3'- ucuaCGuUGUCU---ACGaGCGGCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 41993 | 0.69 | 0.403139 |
Target: 5'- ---aGCAGCAcGGccUGCggcccacgucgagugUCGCCGCGGCGc -3' miRNA: 3'- ucuaCGUUGU-CU--ACG---------------AGCGGCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 815 | 0.69 | 0.390128 |
Target: 5'- cGAU-CAACAGccAUGCUCGCgcgauCGCGGCc -3' miRNA: 3'- uCUAcGUUGUC--UACGAGCG-----GCGCCGc -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 14681 | 0.69 | 0.372023 |
Target: 5'- --cUGCcccGCAcGAUcggGCUCGUCGCGGCGg -3' miRNA: 3'- ucuACGu--UGU-CUA---CGAGCGGCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 15623 | 0.69 | 0.363188 |
Target: 5'- ---cGCAGCAGGcggccggGCUCGCCGaucagGGCGc -3' miRNA: 3'- ucuaCGUUGUCUa------CGAGCGGCg----CCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 31860 | 0.67 | 0.488695 |
Target: 5'- uGGAUGCGgcgGCAGAccacugGCUCGCaggGUGGgCGa -3' miRNA: 3'- -UCUACGU---UGUCUa-----CGAGCGg--CGCC-GC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 3871 | 0.67 | 0.49604 |
Target: 5'- aAGGUGCGaaagccgcuguucuGCAcGAUGCg-GUCGCGGCc -3' miRNA: 3'- -UCUACGU--------------UGU-CUACGagCGGCGCCGc -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 30114 | 0.67 | 0.498148 |
Target: 5'- uGAUGgAGCuGgcGCUCGCCuaugaggGUGGCGu -3' miRNA: 3'- uCUACgUUGuCuaCGAGCGG-------CGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 30860 | 0.67 | 0.503435 |
Target: 5'- cGGUGCGcgccauugaucgcgcGCAGAaggaaCUCGCCGCGcGCa -3' miRNA: 3'- uCUACGU---------------UGUCUac---GAGCGGCGC-CGc -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 41691 | 0.67 | 0.509812 |
Target: 5'- cAGAcGCAGCAGAUcCUCacggGCCGCGcCGg -3' miRNA: 3'- -UCUaCGUUGUCUAcGAG----CGGCGCcGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 5575 | 0.67 | 0.520513 |
Target: 5'- --cUGCGGCcGGUGCUgcggccggUGCUGCGGCc -3' miRNA: 3'- ucuACGUUGuCUACGA--------GCGGCGCCGc -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 18496 | 0.67 | 0.520513 |
Target: 5'- gAGAUcGCGccgauCAGcgucGUGCUgacgacggCGCCGCGGCGu -3' miRNA: 3'- -UCUA-CGUu----GUC----UACGA--------GCGGCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 1420 | 0.67 | 0.520513 |
Target: 5'- aGGAUGUAGCGcucGAgcguCUCGCCcuGCGGCu -3' miRNA: 3'- -UCUACGUUGU---CUac--GAGCGG--CGCCGc -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 10508 | 0.67 | 0.520513 |
Target: 5'- ---cGCGAUGGGUGCacugCGCCGuCGGUc -3' miRNA: 3'- ucuaCGUUGUCUACGa---GCGGC-GCCGc -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 483 | 0.66 | 0.542169 |
Target: 5'- ---aGCAACAGcgGg-CGgCGCGGCGc -3' miRNA: 3'- ucuaCGUUGUCuaCgaGCgGCGCCGC- -5' |
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28110 | 3' | -56.4 | NC_005887.1 | + | 7478 | 0.75 | 0.147893 |
Target: 5'- aGGcgGCGGCGGGUGCga-CCGUGGCGa -3' miRNA: 3'- -UCuaCGUUGUCUACGagcGGCGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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