miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 13011 0.7 0.354499
Target:  5'- --cUGUAGCGucGcgGCUUGCUGCGGCa -3'
miRNA:   3'- ucuACGUUGU--CuaCGAGCGGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 13329 0.66 0.564116
Target:  5'- cGGccGCAucGCGGAU-CUCGCCGCGcaGUGg -3'
miRNA:   3'- -UCuaCGU--UGUCUAcGAGCGGCGC--CGC- -5'
28110 3' -56.4 NC_005887.1 + 13475 0.7 0.354499
Target:  5'- ---cGCAGCAGcgGCUUGCCGCcGaCGu -3'
miRNA:   3'- ucuaCGUUGUCuaCGAGCGGCGcC-GC- -5'
28110 3' -56.4 NC_005887.1 + 14306 0.69 0.380099
Target:  5'- cGGcgGCAAgauCGGAUGCcgCGCCgaacagcGCGGCGc -3'
miRNA:   3'- -UCuaCGUU---GUCUACGa-GCGG-------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 14488 0.68 0.408799
Target:  5'- ---cGC-GCAGAucgUGCcCGCCGCGGUGc -3'
miRNA:   3'- ucuaCGuUGUCU---ACGaGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 14681 0.69 0.372023
Target:  5'- --cUGCcccGCAcGAUcggGCUCGUCGCGGCGg -3'
miRNA:   3'- ucuACGu--UGU-CUA---CGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 15356 0.69 0.399393
Target:  5'- aGGuAUGCGGCAGucucGUUCGCCgGCGGaCGc -3'
miRNA:   3'- -UC-UACGUUGUCua--CGAGCGG-CGCC-GC- -5'
28110 3' -56.4 NC_005887.1 + 15623 0.69 0.363188
Target:  5'- ---cGCAGCAGGcggccggGCUCGCCGaucagGGCGc -3'
miRNA:   3'- ucuaCGUUGUCUa------CGAGCGGCg----CCGC- -5'
28110 3' -56.4 NC_005887.1 + 15822 0.67 0.478291
Target:  5'- cGAgGC-GCAGGUGCagCGCuugCGCGGCGc -3'
miRNA:   3'- uCUaCGuUGUCUACGa-GCG---GCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 16313 0.67 0.478291
Target:  5'- ---gGCGACGGugcccgugcGCUCGCCGgcCGGCGu -3'
miRNA:   3'- ucuaCGUUGUCua-------CGAGCGGC--GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 16507 0.68 0.418341
Target:  5'- cGAUGUcGCAGGccgaucGCgUCGCCGCcGGCGc -3'
miRNA:   3'- uCUACGuUGUCUa-----CG-AGCGGCG-CCGC- -5'
28110 3' -56.4 NC_005887.1 + 17654 0.66 0.564116
Target:  5'- aAGcUGCAggGCAcGAUcCUCGCCGCgcuuGGCGa -3'
miRNA:   3'- -UCuACGU--UGU-CUAcGAGCGGCG----CCGC- -5'
28110 3' -56.4 NC_005887.1 + 18496 0.67 0.520513
Target:  5'- gAGAUcGCGccgauCAGcgucGUGCUgacgacggCGCCGCGGCGu -3'
miRNA:   3'- -UCUA-CGUu----GUC----UACGA--------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 18574 0.77 0.117858
Target:  5'- ---gGCGACA--UGCUCGUCGCGGCGu -3'
miRNA:   3'- ucuaCGUUGUcuACGAGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 21273 0.68 0.437825
Target:  5'- ---cGCGGCGGcgGCguaugCGCUGCuGGCGu -3'
miRNA:   3'- ucuaCGUUGUCuaCGa----GCGGCG-CCGC- -5'
28110 3' -56.4 NC_005887.1 + 23365 0.68 0.4251
Target:  5'- cGcgGCGcucGCAGAUGCUuuugcugcucgcgcUGCCGCuGGCa -3'
miRNA:   3'- uCuaCGU---UGUCUACGA--------------GCGGCG-CCGc -5'
28110 3' -56.4 NC_005887.1 + 23447 0.7 0.310931
Target:  5'- cAGcgGCAGCGcGAgcagcaaaagcaucUGCgagCGCCGCGGUGc -3'
miRNA:   3'- -UCuaCGUUGU-CU--------------ACGa--GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 24640 0.66 0.575178
Target:  5'- -cAUGC-GCAGGUGUgaaGCUGaCGGCGa -3'
miRNA:   3'- ucUACGuUGUCUACGag-CGGC-GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 25491 0.71 0.283003
Target:  5'- ---cGCAGCGGcgGCUCGgacgauggCGCGGCGg -3'
miRNA:   3'- ucuaCGUUGUCuaCGAGCg-------GCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 29163 0.71 0.275805
Target:  5'- cAGGUaGUAGCGGAUGuCUUGCUGCGcuGCGa -3'
miRNA:   3'- -UCUA-CGUUGUCUAC-GAGCGGCGC--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.