miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 24640 0.66 0.575178
Target:  5'- -cAUGC-GCAGGUGUgaaGCUGaCGGCGa -3'
miRNA:   3'- ucUACGuUGUCUACGag-CGGC-GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 8781 0.69 0.399393
Target:  5'- uGGccGCGAC-GAaGCgcuuacCGCCGCGGCGg -3'
miRNA:   3'- -UCuaCGUUGuCUaCGa-----GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 14306 0.69 0.380099
Target:  5'- cGGcgGCAAgauCGGAUGCcgCGCCgaacagcGCGGCGc -3'
miRNA:   3'- -UCuaCGUU---GUCUACGa-GCGG-------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 7478 0.75 0.147893
Target:  5'- aGGcgGCGGCGGGUGCga-CCGUGGCGa -3'
miRNA:   3'- -UCuaCGUUGUCUACGagcGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 18496 0.67 0.520513
Target:  5'- gAGAUcGCGccgauCAGcgucGUGCUgacgacggCGCCGCGGCGu -3'
miRNA:   3'- -UCUA-CGUu----GUC----UACGA--------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 5575 0.67 0.520513
Target:  5'- --cUGCGGCcGGUGCUgcggccggUGCUGCGGCc -3'
miRNA:   3'- ucuACGUUGuCUACGA--------GCGGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 30860 0.67 0.503435
Target:  5'- cGGUGCGcgccauugaucgcgcGCAGAaggaaCUCGCCGCGcGCa -3'
miRNA:   3'- uCUACGU---------------UGUCUac---GAGCGGCGC-CGc -5'
28110 3' -56.4 NC_005887.1 + 30114 0.67 0.498148
Target:  5'- uGAUGgAGCuGgcGCUCGCCuaugaggGUGGCGu -3'
miRNA:   3'- uCUACgUUGuCuaCGAGCGG-------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 16313 0.67 0.478291
Target:  5'- ---gGCGACGGugcccgugcGCUCGCCGgcCGGCGu -3'
miRNA:   3'- ucuaCGUUGUCua-------CGAGCGGC--GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 34338 0.68 0.408799
Target:  5'- ---gGCGACGGcAUGCgcaaGCCGCGaGCGc -3'
miRNA:   3'- ucuaCGUUGUC-UACGag--CGGCGC-CGC- -5'
28110 3' -56.4 NC_005887.1 + 3041 0.67 0.477257
Target:  5'- aAGAaGCGACGGAcGUggagUCGCCggcgaggauggucGCGGCGg -3'
miRNA:   3'- -UCUaCGUUGUCUaCG----AGCGG-------------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 31860 0.67 0.488695
Target:  5'- uGGAUGCGgcgGCAGAccacugGCUCGCaggGUGGgCGa -3'
miRNA:   3'- -UCUACGU---UGUCUa-----CGAGCGg--CGCC-GC- -5'
28110 3' -56.4 NC_005887.1 + 483 0.66 0.542169
Target:  5'- ---aGCAACAGcgGg-CGgCGCGGCGc -3'
miRNA:   3'- ucuaCGUUGUCuaCgaGCgGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 37406 0.68 0.418341
Target:  5'- aGGAUGCGGCGaccGAUGCcagugccggCGCUGCuGCGa -3'
miRNA:   3'- -UCUACGUUGU---CUACGa--------GCGGCGcCGC- -5'
28110 3' -56.4 NC_005887.1 + 10508 0.67 0.520513
Target:  5'- ---cGCGAUGGGUGCacugCGCCGuCGGUc -3'
miRNA:   3'- ucuaCGUUGUCUACGa---GCGGC-GCCGc -5'
28110 3' -56.4 NC_005887.1 + 3871 0.67 0.49604
Target:  5'- aAGGUGCGaaagccgcuguucuGCAcGAUGCg-GUCGCGGCc -3'
miRNA:   3'- -UCUACGU--------------UGU-CUACGagCGGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 2565 0.68 0.417381
Target:  5'- cGGGUGCAcgaGCAGGccggGCUCGCCGuCGaugauccGCGu -3'
miRNA:   3'- -UCUACGU---UGUCUa---CGAGCGGC-GC-------CGC- -5'
28110 3' -56.4 NC_005887.1 + 15356 0.69 0.399393
Target:  5'- aGGuAUGCGGCAGucucGUUCGCCgGCGGaCGc -3'
miRNA:   3'- -UC-UACGUUGUCua--CGAGCGG-CGCC-GC- -5'
28110 3' -56.4 NC_005887.1 + 1420 0.67 0.520513
Target:  5'- aGGAUGUAGCGcucGAgcguCUCGCCcuGCGGCu -3'
miRNA:   3'- -UCUACGUUGU---CUac--GAGCGG--CGCCGc -5'
28110 3' -56.4 NC_005887.1 + 41691 0.67 0.509812
Target:  5'- cAGAcGCAGCAGAUcCUCacggGCCGCGcCGg -3'
miRNA:   3'- -UCUaCGUUGUCUAcGAG----CGGCGCcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.