miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 41993 0.69 0.403139
Target:  5'- ---aGCAGCAcGGccUGCggcccacgucgagugUCGCCGCGGCGc -3'
miRNA:   3'- ucuaCGUUGU-CU--ACG---------------AGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 41691 0.67 0.509812
Target:  5'- cAGAcGCAGCAGAUcCUCacggGCCGCGcCGg -3'
miRNA:   3'- -UCUaCGUUGUCUAcGAG----CGGCGCcGC- -5'
28110 3' -56.4 NC_005887.1 + 41596 0.66 0.575178
Target:  5'- cAGcgGCGGCccAGGUGCggcggcCGgCGCGGCc -3'
miRNA:   3'- -UCuaCGUUG--UCUACGa-----GCgGCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 41534 0.71 0.29035
Target:  5'- gGGAUGaugAGCAGAUcCUCG-CGCGGCGu -3'
miRNA:   3'- -UCUACg--UUGUCUAcGAGCgGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 40140 0.66 0.575178
Target:  5'- cGGUGCGcgcuGCGcgccgcGCUCGCCGCGuGUGa -3'
miRNA:   3'- uCUACGU----UGUcua---CGAGCGGCGC-CGC- -5'
28110 3' -56.4 NC_005887.1 + 39023 0.66 0.575178
Target:  5'- ---aGuCGACGGcgGCUUGCUGCGGa- -3'
miRNA:   3'- ucuaC-GUUGUCuaCGAGCGGCGCCgc -5'
28110 3' -56.4 NC_005887.1 + 37406 0.68 0.418341
Target:  5'- aGGAUGCGGCGaccGAUGCcagugccggCGCUGCuGCGa -3'
miRNA:   3'- -UCUACGUUGU---CUACGa--------GCGGCGcCGC- -5'
28110 3' -56.4 NC_005887.1 + 35417 0.67 0.478291
Target:  5'- uGGUGCcgGGCGuGAaGCUcguggccggcCGCCGCGGCGc -3'
miRNA:   3'- uCUACG--UUGU-CUaCGA----------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 34338 0.68 0.408799
Target:  5'- ---gGCGACGGcAUGCgcaaGCCGCGaGCGc -3'
miRNA:   3'- ucuaCGUUGUC-UACGag--CGGCGC-CGC- -5'
28110 3' -56.4 NC_005887.1 + 34311 0.71 0.271556
Target:  5'- gGGcgGCAACGGGUaGCgagaaaggguuuugUGCCGUGGCGc -3'
miRNA:   3'- -UCuaCGUUGUCUA-CGa-------------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 34031 0.7 0.351921
Target:  5'- cGGUGCuGACGGAcgccgcacgcgacgUGCUCGCCGagcgccguCGGCa -3'
miRNA:   3'- uCUACG-UUGUCU--------------ACGAGCGGC--------GCCGc -5'
28110 3' -56.4 NC_005887.1 + 33712 0.71 0.268753
Target:  5'- uGgcGCGGCGGucgaucUGCUCGaUCGCGGCGa -3'
miRNA:   3'- uCuaCGUUGUCu-----ACGAGC-GGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 33363 0.74 0.174834
Target:  5'- cGAcUGCAGCGGAUGUgcacgCGCCggcGCGGCa -3'
miRNA:   3'- uCU-ACGUUGUCUACGa----GCGG---CGCCGc -5'
28110 3' -56.4 NC_005887.1 + 33144 0.67 0.499204
Target:  5'- uAGAaGCAGCcGAccg-UGCCGCGGCGg -3'
miRNA:   3'- -UCUaCGUUGuCUacgaGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 31860 0.67 0.488695
Target:  5'- uGGAUGCGgcgGCAGAccacugGCUCGCaggGUGGgCGa -3'
miRNA:   3'- -UCUACGU---UGUCUa-----CGAGCGg--CGCC-GC- -5'
28110 3' -56.4 NC_005887.1 + 30860 0.67 0.503435
Target:  5'- cGGUGCGcgccauugaucgcgcGCAGAaggaaCUCGCCGCGcGCa -3'
miRNA:   3'- uCUACGU---------------UGUCUac---GAGCGGCGC-CGc -5'
28110 3' -56.4 NC_005887.1 + 30235 0.68 0.441784
Target:  5'- cGAUGUucGACAGGUcggacacguacaggcGCUUGCCGUccGGCGc -3'
miRNA:   3'- uCUACG--UUGUCUA---------------CGAGCGGCG--CCGC- -5'
28110 3' -56.4 NC_005887.1 + 30114 0.67 0.498148
Target:  5'- uGAUGgAGCuGgcGCUCGCCuaugaggGUGGCGu -3'
miRNA:   3'- uCUACgUUGuCuaCGAGCGG-------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 29163 0.71 0.275805
Target:  5'- cAGGUaGUAGCGGAUGuCUUGCUGCGcuGCGa -3'
miRNA:   3'- -UCUA-CGUUGUCUAC-GAGCGGCGC--CGC- -5'
28110 3' -56.4 NC_005887.1 + 25491 0.71 0.283003
Target:  5'- ---cGCAGCGGcgGCUCGgacgauggCGCGGCGg -3'
miRNA:   3'- ucuaCGUUGUCuaCGAGCg-------GCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.