miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 3' -56.4 NC_005887.1 + 31860 0.67 0.488695
Target:  5'- uGGAUGCGgcgGCAGAccacugGCUCGCaggGUGGgCGa -3'
miRNA:   3'- -UCUACGU---UGUCUa-----CGAGCGg--CGCC-GC- -5'
28110 3' -56.4 NC_005887.1 + 35417 0.67 0.478291
Target:  5'- uGGUGCcgGGCGuGAaGCUcguggccggcCGCCGCGGCGc -3'
miRNA:   3'- uCUACG--UUGU-CUaCGA----------GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 16313 0.67 0.478291
Target:  5'- ---gGCGACGGugcccgugcGCUCGCCGgcCGGCGu -3'
miRNA:   3'- ucuaCGUUGUCua-------CGAGCGGC--GCCGC- -5'
28110 3' -56.4 NC_005887.1 + 15822 0.67 0.478291
Target:  5'- cGAgGC-GCAGGUGCagCGCuugCGCGGCGc -3'
miRNA:   3'- uCUaCGuUGUCUACGa-GCG---GCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 3041 0.67 0.477257
Target:  5'- aAGAaGCGACGGAcGUggagUCGCCggcgaggauggucGCGGCGg -3'
miRNA:   3'- -UCUaCGUUGUCUaCG----AGCGG-------------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 3386 0.67 0.467997
Target:  5'- uGGUGC-GCAcGcUGUUCGCCGCGcGCu -3'
miRNA:   3'- uCUACGuUGU-CuACGAGCGGCGC-CGc -5'
28110 3' -56.4 NC_005887.1 + 30235 0.68 0.441784
Target:  5'- cGAUGUucGACAGGUcggacacguacaggcGCUUGCCGUccGGCGc -3'
miRNA:   3'- uCUACG--UUGUCUA---------------CGAGCGGCG--CCGC- -5'
28110 3' -56.4 NC_005887.1 + 21273 0.68 0.437825
Target:  5'- ---cGCGGCGGcgGCguaugCGCUGCuGGCGu -3'
miRNA:   3'- ucuaCGUUGUCuaCGa----GCGGCG-CCGC- -5'
28110 3' -56.4 NC_005887.1 + 23365 0.68 0.4251
Target:  5'- cGcgGCGcucGCAGAUGCUuuugcugcucgcgcUGCCGCuGGCa -3'
miRNA:   3'- uCuaCGU---UGUCUACGA--------------GCGGCG-CCGc -5'
28110 3' -56.4 NC_005887.1 + 37406 0.68 0.418341
Target:  5'- aGGAUGCGGCGaccGAUGCcagugccggCGCUGCuGCGa -3'
miRNA:   3'- -UCUACGUUGU---CUACGa--------GCGGCGcCGC- -5'
28110 3' -56.4 NC_005887.1 + 16507 0.68 0.418341
Target:  5'- cGAUGUcGCAGGccgaucGCgUCGCCGCcGGCGc -3'
miRNA:   3'- uCUACGuUGUCUa-----CG-AGCGGCG-CCGC- -5'
28110 3' -56.4 NC_005887.1 + 2565 0.68 0.417381
Target:  5'- cGGGUGCAcgaGCAGGccggGCUCGCCGuCGaugauccGCGu -3'
miRNA:   3'- -UCUACGU---UGUCUa---CGAGCGGC-GC-------CGC- -5'
28110 3' -56.4 NC_005887.1 + 14488 0.68 0.408799
Target:  5'- ---cGC-GCAGAucgUGCcCGCCGCGGUGc -3'
miRNA:   3'- ucuaCGuUGUCU---ACGaGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 34338 0.68 0.408799
Target:  5'- ---gGCGACGGcAUGCgcaaGCCGCGaGCGc -3'
miRNA:   3'- ucuaCGUUGUC-UACGag--CGGCGC-CGC- -5'
28110 3' -56.4 NC_005887.1 + 41993 0.69 0.403139
Target:  5'- ---aGCAGCAcGGccUGCggcccacgucgagugUCGCCGCGGCGc -3'
miRNA:   3'- ucuaCGUUGU-CU--ACG---------------AGCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 15356 0.69 0.399393
Target:  5'- aGGuAUGCGGCAGucucGUUCGCCgGCGGaCGc -3'
miRNA:   3'- -UC-UACGUUGUCua--CGAGCGG-CGCC-GC- -5'
28110 3' -56.4 NC_005887.1 + 8781 0.69 0.399393
Target:  5'- uGGccGCGAC-GAaGCgcuuacCGCCGCGGCGg -3'
miRNA:   3'- -UCuaCGUUGuCUaCGa-----GCGGCGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 815 0.69 0.390128
Target:  5'- cGAU-CAACAGccAUGCUCGCgcgauCGCGGCc -3'
miRNA:   3'- uCUAcGUUGUC--UACGAGCG-----GCGCCGc -5'
28110 3' -56.4 NC_005887.1 + 14306 0.69 0.380099
Target:  5'- cGGcgGCAAgauCGGAUGCcgCGCCgaacagcGCGGCGc -3'
miRNA:   3'- -UCuaCGUU---GUCUACGa-GCGG-------CGCCGC- -5'
28110 3' -56.4 NC_005887.1 + 14681 0.69 0.372023
Target:  5'- --cUGCcccGCAcGAUcggGCUCGUCGCGGCGg -3'
miRNA:   3'- ucuACGu--UGU-CUA---CGAGCGGCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.