miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 5' -55.6 NC_005887.1 + 4640 1.11 0.00051
Target:  5'- cGCCGGCGCGAUCAAGGAUCUCAGCGAc -3'
miRNA:   3'- -CGGCCGCGCUAGUUCCUAGAGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 3348 0.81 0.075463
Target:  5'- cGCCGGCGUGAUCAuGGAauccaUCgCGGCGAc -3'
miRNA:   3'- -CGGCCGCGCUAGUuCCU-----AGaGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 16730 0.8 0.084775
Target:  5'- gGCCGGCGCGAUCAAgucGGAUUaCAuGCGGc -3'
miRNA:   3'- -CGGCCGCGCUAGUU---CCUAGaGU-CGCU- -5'
28110 5' -55.6 NC_005887.1 + 41617 0.76 0.177128
Target:  5'- gGCCGGCGCGGcccgUGAGGAUCUgCuGCGu -3'
miRNA:   3'- -CGGCCGCGCUa---GUUCCUAGA-GuCGCu -5'
28110 5' -55.6 NC_005887.1 + 40781 0.75 0.208541
Target:  5'- cGCCGaGCcgGCGGUCGAGGuUCguggCGGCGAc -3'
miRNA:   3'- -CGGC-CG--CGCUAGUUCCuAGa---GUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 29397 0.73 0.25779
Target:  5'- uGCCGGCGCGGUCGcgaucAGGcUCgaCAGCu- -3'
miRNA:   3'- -CGGCCGCGCUAGU-----UCCuAGa-GUCGcu -5'
28110 5' -55.6 NC_005887.1 + 15842 0.73 0.271503
Target:  5'- uGCgCGGCGCGAUCGAGGGaaacgcccgCgcgCAGCa- -3'
miRNA:   3'- -CG-GCCGCGCUAGUUCCUa--------Ga--GUCGcu -5'
28110 5' -55.6 NC_005887.1 + 37476 0.72 0.293163
Target:  5'- cGCCGGaUGCGAUCAGGG----CGGCGGu -3'
miRNA:   3'- -CGGCC-GCGCUAGUUCCuagaGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 33384 0.71 0.340469
Target:  5'- cGCCGGCGCGG-C-AGGAUgaggCUCAucGCGGu -3'
miRNA:   3'- -CGGCCGCGCUaGuUCCUA----GAGU--CGCU- -5'
28110 5' -55.6 NC_005887.1 + 28749 0.71 0.357419
Target:  5'- cGCgGGCGUGAUCGcGGGUUgucgUCuGGCGAa -3'
miRNA:   3'- -CGgCCGCGCUAGUuCCUAG----AG-UCGCU- -5'
28110 5' -55.6 NC_005887.1 + 13395 0.71 0.366114
Target:  5'- gGCCGGCGCGGc---GGAcgUCGGCGGc -3'
miRNA:   3'- -CGGCCGCGCUaguuCCUagAGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 26348 0.7 0.383936
Target:  5'- gGCCGgguGCGCGAacaUCAccGGGAUCUugcCAGCGu -3'
miRNA:   3'- -CGGC---CGCGCU---AGU--UCCUAGA---GUCGCu -5'
28110 5' -55.6 NC_005887.1 + 11406 0.7 0.402324
Target:  5'- gGCCGGCGCcgcCAAGGcaucGUCUgAGCGc -3'
miRNA:   3'- -CGGCCGCGcuaGUUCC----UAGAgUCGCu -5'
28110 5' -55.6 NC_005887.1 + 13326 0.7 0.411725
Target:  5'- cGCCGGC-CGcAUCGcGGAUCUCGccGCGc -3'
miRNA:   3'- -CGGCCGcGC-UAGUuCCUAGAGU--CGCu -5'
28110 5' -55.6 NC_005887.1 + 13679 0.69 0.420302
Target:  5'- -gCGGCGCGA-CGgguGGGAUCUCgaccacgGGCGGc -3'
miRNA:   3'- cgGCCGCGCUaGU---UCCUAGAG-------UCGCU- -5'
28110 5' -55.6 NC_005887.1 + 17161 0.69 0.421261
Target:  5'- cCCGGCGUcGUCGAGGuauugcgagcgGUCgagCAGCGGc -3'
miRNA:   3'- cGGCCGCGcUAGUUCC-----------UAGa--GUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 14617 0.69 0.440726
Target:  5'- cGUCGGCGCcGUCGAGGGcgcgCUCAcggcagccggcGCGGu -3'
miRNA:   3'- -CGGCCGCGcUAGUUCCUa---GAGU-----------CGCU- -5'
28110 5' -55.6 NC_005887.1 + 25067 0.69 0.450648
Target:  5'- cGCCGGCGCGAgcu--GAcgCUCGGCa- -3'
miRNA:   3'- -CGGCCGCGCUaguucCUa-GAGUCGcu -5'
28110 5' -55.6 NC_005887.1 + 16532 0.69 0.460692
Target:  5'- cGCCGGCGcCGAgu-GGGcgCgUCAGCa- -3'
miRNA:   3'- -CGGCCGC-GCUaguUCCuaG-AGUCGcu -5'
28110 5' -55.6 NC_005887.1 + 11731 0.69 0.474949
Target:  5'- cGCaCGGCGCGcacgaaugcacgcaaCAgcaugaucaccgguGGGAUCUCGGCGGc -3'
miRNA:   3'- -CG-GCCGCGCua-------------GU--------------UCCUAGAGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.