Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 1841 | 0.66 | 0.655635 |
Target: 5'- gGCCGaCGCGcaggucgagcauGUCGAGGAUCggCuucGCGAg -3' miRNA: 3'- -CGGCcGCGC------------UAGUUCCUAGa-Gu--CGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 2506 | 0.66 | 0.655635 |
Target: 5'- cGCCGuaGCGcgCGAGGugucauUCgUCGGCGc -3' miRNA: 3'- -CGGCcgCGCuaGUUCCu-----AG-AGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 2817 | 0.66 | 0.611019 |
Target: 5'- uCCGGaGCGAUCAuGGcuaGUCuguUCAGCGGu -3' miRNA: 3'- cGGCCgCGCUAGUuCC---UAG---AGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 3348 | 0.81 | 0.075463 |
Target: 5'- cGCCGGCGUGAUCAuGGAauccaUCgCGGCGAc -3' miRNA: 3'- -CGGCCGCGCUAGUuCCU-----AGaGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 4355 | 0.66 | 0.62217 |
Target: 5'- cGCCGGCGCGGauguGGAUgUCgAGUa- -3' miRNA: 3'- -CGGCCGCGCUaguuCCUAgAG-UCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 4404 | 0.66 | 0.643373 |
Target: 5'- cGCCGGCGuCGAUCAGuuccugcGGcauGUC-CGGCa- -3' miRNA: 3'- -CGGCCGC-GCUAGUU-------CC---UAGaGUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 4640 | 1.11 | 0.00051 |
Target: 5'- cGCCGGCGCGAUCAAGGAUCUCAGCGAc -3' miRNA: 3'- -CGGCCGCGCUAGUUCCUAGAGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 6994 | 0.66 | 0.655635 |
Target: 5'- -aCGGCGCGGccCAugccgaguugcGGGAUucgCUCGGCGGc -3' miRNA: 3'- cgGCCGCGCUa-GU-----------UCCUA---GAGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 8517 | 0.68 | 0.501991 |
Target: 5'- cGCCGGgCGCucGAUCGcguugacgcGGAUCgcUCGGCGAu -3' miRNA: 3'- -CGGCC-GCG--CUAGUu--------CCUAG--AGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 8862 | 0.67 | 0.588784 |
Target: 5'- cGCCGGCGCGcccGUCGA-GAUC---GCGAc -3' miRNA: 3'- -CGGCCGCGC---UAGUUcCUAGaguCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 10477 | 0.67 | 0.54483 |
Target: 5'- gGCCGGCGCGAUCAcgcucgacuGGUCcgCAuCGAu -3' miRNA: 3'- -CGGCCGCGCUAGUuc-------CUAGa-GUcGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 11406 | 0.7 | 0.402324 |
Target: 5'- gGCCGGCGCcgcCAAGGcaucGUCUgAGCGc -3' miRNA: 3'- -CGGCCGCGcuaGUUCC----UAGAgUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 11425 | 0.66 | 0.644488 |
Target: 5'- cGCCcGCGCuGAUCAGGcucagugugCUCAGCGu -3' miRNA: 3'- -CGGcCGCG-CUAGUUCcua------GAGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 11434 | 0.66 | 0.599887 |
Target: 5'- nGCCaacaGGcCGCGAUCAuGGAUCgcaacgcgCAGCu- -3' miRNA: 3'- -CGG----CC-GCGCUAGUuCCUAGa-------GUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 11731 | 0.69 | 0.474949 |
Target: 5'- cGCaCGGCGCGcacgaaugcacgcaaCAgcaugaucaccgguGGGAUCUCGGCGGc -3' miRNA: 3'- -CG-GCCGCGCua-------------GU--------------UCCUAGAGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 12800 | 0.68 | 0.480094 |
Target: 5'- aGCgCGGCGCGAUCGAGcGcauUCUgcugcugcgcgacCAGCGu -3' miRNA: 3'- -CG-GCCGCGCUAGUUC-Cu--AGA-------------GUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 12886 | 0.66 | 0.63333 |
Target: 5'- uGCCGuGCGCGAgcu--GAUCggcaCGGCGAg -3' miRNA: 3'- -CGGC-CGCGCUaguucCUAGa---GUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 13326 | 0.7 | 0.411725 |
Target: 5'- cGCCGGC-CGcAUCGcGGAUCUCGccGCGc -3' miRNA: 3'- -CGGCCGcGC-UAGUuCCUAGAGU--CGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 13395 | 0.71 | 0.366114 |
Target: 5'- gGCCGGCGCGGc---GGAcgUCGGCGGc -3' miRNA: 3'- -CGGCCGCGCUaguuCCUagAGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 13679 | 0.69 | 0.420302 |
Target: 5'- -gCGGCGCGA-CGgguGGGAUCUCgaccacgGGCGGc -3' miRNA: 3'- cgGCCGCGCUaGU---UCCUAGAG-------UCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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