miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28110 5' -55.6 NC_005887.1 + 41679 0.66 0.62217
Target:  5'- aGCCGGacgaagguaGCGAgcugcgCGAGGggCUCaucaaGGCGAu -3'
miRNA:   3'- -CGGCCg--------CGCUa-----GUUCCuaGAG-----UCGCU- -5'
28110 5' -55.6 NC_005887.1 + 41617 0.76 0.177128
Target:  5'- gGCCGGCGCGGcccgUGAGGAUCUgCuGCGu -3'
miRNA:   3'- -CGGCCGCGCUa---GUUCCUAGA-GuCGCu -5'
28110 5' -55.6 NC_005887.1 + 41526 0.68 0.512571
Target:  5'- uGCuCGGCaaGAUCcgcGAGGcgCUCGGCGc -3'
miRNA:   3'- -CG-GCCGcgCUAG---UUCCuaGAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 41018 0.68 0.481126
Target:  5'- cGCCGaaGCGGUCGAGcauGcgCUCGGCGu -3'
miRNA:   3'- -CGGCcgCGCUAGUUC---CuaGAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 40781 0.75 0.208541
Target:  5'- cGCCGaGCcgGCGGUCGAGGuUCguggCGGCGAc -3'
miRNA:   3'- -CGGC-CG--CGCUAGUUCCuAGa---GUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 39953 0.68 0.491507
Target:  5'- uGCUGGUccaccauucacGUGAUgcgCGAGGcgCUCAGCGGu -3'
miRNA:   3'- -CGGCCG-----------CGCUA---GUUCCuaGAGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 37706 0.67 0.533997
Target:  5'- cGCCGGgGgCGAUCAGG---UUCAGCGc -3'
miRNA:   3'- -CGGCCgC-GCUAGUUCcuaGAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 37476 0.72 0.293163
Target:  5'- cGCCGGaUGCGAUCAGGG----CGGCGGu -3'
miRNA:   3'- -CGGCC-GCGCUAGUUCCuagaGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 37111 0.67 0.54483
Target:  5'- gGCCGGCaaGA---AGGggCUCAGCGc -3'
miRNA:   3'- -CGGCCGcgCUaguUCCuaGAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 34704 0.66 0.644488
Target:  5'- aGCCGGCGCGccucGUCGAcGcGAa--CGGCGAa -3'
miRNA:   3'- -CGGCCGCGC----UAGUU-C-CUagaGUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 33384 0.71 0.340469
Target:  5'- cGCCGGCGCGG-C-AGGAUgaggCUCAucGCGGu -3'
miRNA:   3'- -CGGCCGCGCUaGuUCCUA----GAGU--CGCU- -5'
28110 5' -55.6 NC_005887.1 + 32438 0.68 0.481126
Target:  5'- gGCCGGCgGCGAUCAGGuugCgCAGCc- -3'
miRNA:   3'- -CGGCCG-CGCUAGUUCcuaGaGUCGcu -5'
28110 5' -55.6 NC_005887.1 + 29397 0.73 0.25779
Target:  5'- uGCCGGCGCGGUCGcgaucAGGcUCgaCAGCu- -3'
miRNA:   3'- -CGGCCGCGCUAGU-----UCCuAGa-GUCGcu -5'
28110 5' -55.6 NC_005887.1 + 28749 0.71 0.357419
Target:  5'- cGCgGGCGUGAUCGcGGGUUgucgUCuGGCGAa -3'
miRNA:   3'- -CGgCCGCGCUAGUuCCUAG----AG-UCGCU- -5'
28110 5' -55.6 NC_005887.1 + 28418 0.68 0.491507
Target:  5'- aGCCGaGCGCGcgC-AGGcgCUCGugcucGCGAa -3'
miRNA:   3'- -CGGC-CGCGCuaGuUCCuaGAGU-----CGCU- -5'
28110 5' -55.6 NC_005887.1 + 26348 0.7 0.383936
Target:  5'- gGCCGgguGCGCGAacaUCAccGGGAUCUugcCAGCGu -3'
miRNA:   3'- -CGGC---CGCGCU---AGU--UCCUAGA---GUCGCu -5'
28110 5' -55.6 NC_005887.1 + 25067 0.69 0.450648
Target:  5'- cGCCGGCGCGAgcu--GAcgCUCGGCa- -3'
miRNA:   3'- -CGGCCGCGCUaguucCUa-GAGUCGcu -5'
28110 5' -55.6 NC_005887.1 + 24589 0.68 0.501991
Target:  5'- gGCCGcGCGUGAugcuuaccgUCGAGGAaCU-GGCGAa -3'
miRNA:   3'- -CGGC-CGCGCU---------AGUUCCUaGAgUCGCU- -5'
28110 5' -55.6 NC_005887.1 + 23624 0.66 0.62217
Target:  5'- uGCCGGCcgGCGAUgCGGGcGGcgUCAGCGu -3'
miRNA:   3'- -CGGCCG--CGCUA-GUUC-CUagAGUCGCu -5'
28110 5' -55.6 NC_005887.1 + 22944 0.67 0.555733
Target:  5'- aCCaGCGCG--CGAGGAUCUgaUAGCGGc -3'
miRNA:   3'- cGGcCGCGCuaGUUCCUAGA--GUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.