Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 10477 | 0.67 | 0.54483 |
Target: 5'- gGCCGGCGCGAUCAcgcucgacuGGUCcgCAuCGAu -3' miRNA: 3'- -CGGCCGCGCUAGUuc-------CUAGa-GUcGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 13679 | 0.69 | 0.420302 |
Target: 5'- -gCGGCGCGA-CGgguGGGAUCUCgaccacgGGCGGc -3' miRNA: 3'- cgGCCGCGCUaGU---UCCUAGAG-------UCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 14617 | 0.69 | 0.440726 |
Target: 5'- cGUCGGCGCcGUCGAGGGcgcgCUCAcggcagccggcGCGGu -3' miRNA: 3'- -CGGCCGCGcUAGUUCCUa---GAGU-----------CGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 16532 | 0.69 | 0.460692 |
Target: 5'- cGCCGGCGcCGAgu-GGGcgCgUCAGCa- -3' miRNA: 3'- -CGGCCGC-GCUaguUCCuaG-AGUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 11731 | 0.69 | 0.474949 |
Target: 5'- cGCaCGGCGCGcacgaaugcacgcaaCAgcaugaucaccgguGGGAUCUCGGCGGc -3' miRNA: 3'- -CG-GCCGCGCua-------------GU--------------UCCUAGAGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 32438 | 0.68 | 0.481126 |
Target: 5'- gGCCGGCgGCGAUCAGGuugCgCAGCc- -3' miRNA: 3'- -CGGCCG-CGCUAGUUCcuaGaGUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 28418 | 0.68 | 0.491507 |
Target: 5'- aGCCGaGCGCGcgC-AGGcgCUCGugcucGCGAa -3' miRNA: 3'- -CGGC-CGCGCuaGuUCCuaGAGU-----CGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 41526 | 0.68 | 0.512571 |
Target: 5'- uGCuCGGCaaGAUCcgcGAGGcgCUCGGCGc -3' miRNA: 3'- -CG-GCCGcgCUAG---UUCCuaGAGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 37706 | 0.67 | 0.533997 |
Target: 5'- cGCCGGgGgCGAUCAGG---UUCAGCGc -3' miRNA: 3'- -CGGCCgC-GCUAGUUCcuaGAGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 13326 | 0.7 | 0.411725 |
Target: 5'- cGCCGGC-CGcAUCGcGGAUCUCGccGCGc -3' miRNA: 3'- -CGGCCGcGC-UAGUuCCUAGAGU--CGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 11406 | 0.7 | 0.402324 |
Target: 5'- gGCCGGCGCcgcCAAGGcaucGUCUgAGCGc -3' miRNA: 3'- -CGGCCGCGcuaGUUCC----UAGAgUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 26348 | 0.7 | 0.383936 |
Target: 5'- gGCCGgguGCGCGAacaUCAccGGGAUCUugcCAGCGu -3' miRNA: 3'- -CGGC---CGCGCU---AGU--UCCUAGA---GUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 16730 | 0.8 | 0.084775 |
Target: 5'- gGCCGGCGCGAUCAAgucGGAUUaCAuGCGGc -3' miRNA: 3'- -CGGCCGCGCUAGUU---CCUAGaGU-CGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 41617 | 0.76 | 0.177128 |
Target: 5'- gGCCGGCGCGGcccgUGAGGAUCUgCuGCGu -3' miRNA: 3'- -CGGCCGCGCUa---GUUCCUAGA-GuCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 40781 | 0.75 | 0.208541 |
Target: 5'- cGCCGaGCcgGCGGUCGAGGuUCguggCGGCGAc -3' miRNA: 3'- -CGGC-CG--CGCUAGUUCCuAGa---GUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 29397 | 0.73 | 0.25779 |
Target: 5'- uGCCGGCGCGGUCGcgaucAGGcUCgaCAGCu- -3' miRNA: 3'- -CGGCCGCGCUAGU-----UCCuAGa-GUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 15842 | 0.73 | 0.271503 |
Target: 5'- uGCgCGGCGCGAUCGAGGGaaacgcccgCgcgCAGCa- -3' miRNA: 3'- -CG-GCCGCGCUAGUUCCUa--------Ga--GUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 37476 | 0.72 | 0.293163 |
Target: 5'- cGCCGGaUGCGAUCAGGG----CGGCGGu -3' miRNA: 3'- -CGGCC-GCGCUAGUUCCuagaGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 33384 | 0.71 | 0.340469 |
Target: 5'- cGCCGGCGCGG-C-AGGAUgaggCUCAucGCGGu -3' miRNA: 3'- -CGGCCGCGCUaGuUCCUA----GAGU--CGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 13395 | 0.71 | 0.366114 |
Target: 5'- gGCCGGCGCGGc---GGAcgUCGGCGGc -3' miRNA: 3'- -CGGCCGCGCUaguuCCUagAGUCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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