Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28110 | 5' | -55.6 | NC_005887.1 | + | 1841 | 0.66 | 0.655635 |
Target: 5'- gGCCGaCGCGcaggucgagcauGUCGAGGAUCggCuucGCGAg -3' miRNA: 3'- -CGGCcGCGC------------UAGUUCCUAGa-Gu--CGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 24589 | 0.68 | 0.501991 |
Target: 5'- gGCCGcGCGUGAugcuuaccgUCGAGGAaCU-GGCGAa -3' miRNA: 3'- -CGGC-CGCGCU---------AGUUCCUaGAgUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 22944 | 0.67 | 0.555733 |
Target: 5'- aCCaGCGCG--CGAGGAUCUgaUAGCGGc -3' miRNA: 3'- cGGcCGCGCuaGUUCCUAGA--GUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 17728 | 0.67 | 0.588784 |
Target: 5'- cGCCaaGCGCGG-CGAGGAUCgugcccugCAGCu- -3' miRNA: 3'- -CGGc-CGCGCUaGUUCCUAGa-------GUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 4404 | 0.66 | 0.643373 |
Target: 5'- cGCCGGCGuCGAUCAGuuccugcGGcauGUC-CGGCa- -3' miRNA: 3'- -CGGCCGC-GCUAGUU-------CC---UAGaGUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 34704 | 0.66 | 0.644488 |
Target: 5'- aGCCGGCGCGccucGUCGAcGcGAa--CGGCGAa -3' miRNA: 3'- -CGGCCGCGC----UAGUU-C-CUagaGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 28749 | 0.71 | 0.357419 |
Target: 5'- cGCgGGCGUGAUCGcGGGUUgucgUCuGGCGAa -3' miRNA: 3'- -CGgCCGCGCUAGUuCCUAG----AG-UCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 17161 | 0.69 | 0.421261 |
Target: 5'- cCCGGCGUcGUCGAGGuauugcgagcgGUCgagCAGCGGc -3' miRNA: 3'- cGGCCGCGcUAGUUCC-----------UAGa--GUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 41018 | 0.68 | 0.481126 |
Target: 5'- cGCCGaaGCGGUCGAGcauGcgCUCGGCGu -3' miRNA: 3'- -CGGCcgCGCUAGUUC---CuaGAGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 8517 | 0.68 | 0.501991 |
Target: 5'- cGCCGGgCGCucGAUCGcguugacgcGGAUCgcUCGGCGAu -3' miRNA: 3'- -CGGCC-GCG--CUAGUu--------CCUAG--AGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 23624 | 0.66 | 0.62217 |
Target: 5'- uGCCGGCcgGCGAUgCGGGcGGcgUCAGCGu -3' miRNA: 3'- -CGGCCG--CGCUA-GUUC-CUagAGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 2506 | 0.66 | 0.655635 |
Target: 5'- cGCCGuaGCGcgCGAGGugucauUCgUCGGCGc -3' miRNA: 3'- -CGGCcgCGCuaGUUCCu-----AG-AGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 12800 | 0.68 | 0.480094 |
Target: 5'- aGCgCGGCGCGAUCGAGcGcauUCUgcugcugcgcgacCAGCGu -3' miRNA: 3'- -CG-GCCGCGCUAGUUC-Cu--AGA-------------GUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 6994 | 0.66 | 0.655635 |
Target: 5'- -aCGGCGCGGccCAugccgaguugcGGGAUucgCUCGGCGGc -3' miRNA: 3'- cgGCCGCGCUa-GU-----------UCCUA---GAGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 37111 | 0.67 | 0.54483 |
Target: 5'- gGCCGGCaaGA---AGGggCUCAGCGc -3' miRNA: 3'- -CGGCCGcgCUaguUCCuaGAGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 25067 | 0.69 | 0.450648 |
Target: 5'- cGCCGGCGCGAgcu--GAcgCUCGGCa- -3' miRNA: 3'- -CGGCCGCGCUaguucCUa-GAGUCGcu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 3348 | 0.81 | 0.075463 |
Target: 5'- cGCCGGCGUGAUCAuGGAauccaUCgCGGCGAc -3' miRNA: 3'- -CGGCCGCGCUAGUuCCU-----AGaGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 11425 | 0.66 | 0.644488 |
Target: 5'- cGCCcGCGCuGAUCAGGcucagugugCUCAGCGu -3' miRNA: 3'- -CGGcCGCG-CUAGUUCcua------GAGUCGCu -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 39953 | 0.68 | 0.491507 |
Target: 5'- uGCUGGUccaccauucacGUGAUgcgCGAGGcgCUCAGCGGu -3' miRNA: 3'- -CGGCCG-----------CGCUA---GUUCCuaGAGUCGCU- -5' |
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28110 | 5' | -55.6 | NC_005887.1 | + | 16532 | 0.69 | 0.460692 |
Target: 5'- cGCCGGCGcCGAgu-GGGcgCgUCAGCa- -3' miRNA: 3'- -CGGCCGC-GCUaguUCCuaG-AGUCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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