miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28111 5' -51.8 NC_005887.1 + 4835 1.14 0.001089
Target:  5'- gCCAACCAGUCGACCGUGAUCACGUCCc -3'
miRNA:   3'- -GGUUGGUCAGCUGGCACUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 10547 0.88 0.056038
Target:  5'- gCgGACCAGUCGAgCGUGAUCGCG-CCg -3'
miRNA:   3'- -GgUUGGUCAGCUgGCACUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 31300 0.78 0.25241
Target:  5'- cUCGACCGGcaucggCGcACCgGUGGUCACGUCCc -3'
miRNA:   3'- -GGUUGGUCa-----GC-UGG-CACUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 13737 0.75 0.386666
Target:  5'- uCCcACCcGUCGcGCCGcUGAUCGCGUUCu -3'
miRNA:   3'- -GGuUGGuCAGC-UGGC-ACUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 16292 0.75 0.386666
Target:  5'- gCCGGCCGGcguaUCGAUCGUGAccugCGUGUCCg -3'
miRNA:   3'- -GGUUGGUC----AGCUGGCACUa---GUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 39386 0.74 0.444079
Target:  5'- aCCGagGCCGGcggCGcaACCGUGGUCGCGaCCg -3'
miRNA:   3'- -GGU--UGGUCa--GC--UGGCACUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 40471 0.73 0.474523
Target:  5'- uUCGACCGgcacGUCGGCCGUGccgggcAUCACGauuUCCu -3'
miRNA:   3'- -GGUUGGU----CAGCUGGCAC------UAGUGC---AGG- -5'
28111 5' -51.8 NC_005887.1 + 12629 0.73 0.494335
Target:  5'- aCCAugcgcauGCCGG-CGGCCGUcGAcgcCACGUCCu -3'
miRNA:   3'- -GGU-------UGGUCaGCUGGCA-CUa--GUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 4789 0.73 0.505976
Target:  5'- gCCAGCCGGcgaGGCCGUGcUCGCGg-- -3'
miRNA:   3'- -GGUUGGUCag-CUGGCACuAGUGCagg -5'
28111 5' -51.8 NC_005887.1 + 30758 0.72 0.538289
Target:  5'- gUCggUCAGcUCGACCGUGcgCGCGgcgaguUCCu -3'
miRNA:   3'- -GGuuGGUC-AGCUGGCACuaGUGC------AGG- -5'
28111 5' -51.8 NC_005887.1 + 9895 0.72 0.54922
Target:  5'- uCCAGCCggugcaGGUCGGCgGcacGAUCAUGUUCg -3'
miRNA:   3'- -GGUUGG------UCAGCUGgCa--CUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 23260 0.72 0.54922
Target:  5'- gUAGCCGccccCGGCCGUGAUCGCGagCg -3'
miRNA:   3'- gGUUGGUca--GCUGGCACUAGUGCagG- -5'
28111 5' -51.8 NC_005887.1 + 26766 0.71 0.58239
Target:  5'- uCgAACCAGUCGGCCG-GGUCGagcgagauCGUgCa -3'
miRNA:   3'- -GgUUGGUCAGCUGGCaCUAGU--------GCAgG- -5'
28111 5' -51.8 NC_005887.1 + 34624 0.71 0.615945
Target:  5'- gCCAGCCAuUCG-CCGU--UCGCGUCg -3'
miRNA:   3'- -GGUUGGUcAGCuGGCAcuAGUGCAGg -5'
28111 5' -51.8 NC_005887.1 + 28672 0.71 0.627173
Target:  5'- aCCAuucGCCAGaCGAcaacCCGcGAUCACGcCCg -3'
miRNA:   3'- -GGU---UGGUCaGCU----GGCaCUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 3613 0.7 0.680939
Target:  5'- --cGCCAGgccgcgcagcgcuUCGGCCGUGAaaaccugUCGcCGUCCa -3'
miRNA:   3'- gguUGGUC-------------AGCUGGCACU-------AGU-GCAGG- -5'
28111 5' -51.8 NC_005887.1 + 7473 0.7 0.683164
Target:  5'- gCGGCgGGUgCGACCGUGGcgaUCGuCGUCg -3'
miRNA:   3'- gGUUGgUCA-GCUGGCACU---AGU-GCAGg -5'
28111 5' -51.8 NC_005887.1 + 41392 0.7 0.683164
Target:  5'- cUCAACCGGcgucaCGACCGUGAU-GCGguguUCCu -3'
miRNA:   3'- -GGUUGGUCa----GCUGGCACUAgUGC----AGG- -5'
28111 5' -51.8 NC_005887.1 + 36573 0.69 0.694256
Target:  5'- cCCGAUgcugCGGUCGACCGcacgguuccggUGAUCGCGaaCCu -3'
miRNA:   3'- -GGUUG----GUCAGCUGGC-----------ACUAGUGCa-GG- -5'
28111 5' -51.8 NC_005887.1 + 36394 0.69 0.694256
Target:  5'- aCGGCCg--CGAUgGUGGUCugGUUCa -3'
miRNA:   3'- gGUUGGucaGCUGgCACUAGugCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.