miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28111 5' -51.8 NC_005887.1 + 3163 0.66 0.871661
Target:  5'- gCCGcuuuuCCuucaugCGGCCGUGGUCgGCGUUCa -3'
miRNA:   3'- -GGUu----GGuca---GCUGGCACUAG-UGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 3613 0.7 0.680939
Target:  5'- --cGCCAGgccgcgcagcgcuUCGGCCGUGAaaaccugUCGcCGUCCa -3'
miRNA:   3'- gguUGGUC-------------AGCUGGCACU-------AGU-GCAGG- -5'
28111 5' -51.8 NC_005887.1 + 4789 0.73 0.505976
Target:  5'- gCCAGCCGGcgaGGCCGUGcUCGCGg-- -3'
miRNA:   3'- -GGUUGGUCag-CUGGCACuAGUGCagg -5'
28111 5' -51.8 NC_005887.1 + 4835 1.14 0.001089
Target:  5'- gCCAACCAGUCGACCGUGAUCACGUCCc -3'
miRNA:   3'- -GGUUGGUCAGCUGGCACUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 5500 0.67 0.828368
Target:  5'- --uGCCAG-CgGGCgCGUGGUCGCG-CCg -3'
miRNA:   3'- gguUGGUCaG-CUG-GCACUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 7286 0.68 0.789818
Target:  5'- cCCGGCCgcccgcugugGGUCG-UCGUG-UCGcCGUCCg -3'
miRNA:   3'- -GGUUGG----------UCAGCuGGCACuAGU-GCAGG- -5'
28111 5' -51.8 NC_005887.1 + 7473 0.7 0.683164
Target:  5'- gCGGCgGGUgCGACCGUGGcgaUCGuCGUCg -3'
miRNA:   3'- gGUUGgUCA-GCUGGCACU---AGU-GCAGg -5'
28111 5' -51.8 NC_005887.1 + 8046 0.66 0.863488
Target:  5'- aCGACguGcUCGACgcgugucugCGUGcgCACGUCUg -3'
miRNA:   3'- gGUUGguC-AGCUG---------GCACuaGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 8529 0.68 0.789818
Target:  5'- gCCGAgCGGUUGcGCCGggcgcucGAUCGCGUUg -3'
miRNA:   3'- -GGUUgGUCAGC-UGGCa------CUAGUGCAGg -5'
28111 5' -51.8 NC_005887.1 + 9554 0.66 0.871661
Target:  5'- gCAugCcggGGUCGGCCG-GGUCGuuCGUCg -3'
miRNA:   3'- gGUugG---UCAGCUGGCaCUAGU--GCAGg -5'
28111 5' -51.8 NC_005887.1 + 9895 0.72 0.54922
Target:  5'- uCCAGCCggugcaGGUCGGCgGcacGAUCAUGUUCg -3'
miRNA:   3'- -GGUUGG------UCAGCUGgCa--CUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 10171 0.67 0.828368
Target:  5'- gCCGAUCAGcUGGCCGUcGG-CGCGggCCg -3'
miRNA:   3'- -GGUUGGUCaGCUGGCA-CUaGUGCa-GG- -5'
28111 5' -51.8 NC_005887.1 + 10547 0.88 0.056038
Target:  5'- gCgGACCAGUCGAgCGUGAUCGCG-CCg -3'
miRNA:   3'- -GgUUGGUCAGCUgGCACUAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 10907 0.68 0.779724
Target:  5'- gCAGCCGgcgcagaugacGUCGGCCGgccUGcUCACGcCCg -3'
miRNA:   3'- gGUUGGU-----------CAGCUGGC---ACuAGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 12629 0.73 0.494335
Target:  5'- aCCAugcgcauGCCGG-CGGCCGUcGAcgcCACGUCCu -3'
miRNA:   3'- -GGU-------UGGUCaGCUGGCA-CUa--GUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 12857 0.66 0.871661
Target:  5'- aCCAACaCGGaaggcaCGACCGUGG-CAgGUgCCg -3'
miRNA:   3'- -GGUUG-GUCa-----GCUGGCACUaGUgCA-GG- -5'
28111 5' -51.8 NC_005887.1 + 13737 0.75 0.386666
Target:  5'- uCCcACCcGUCGcGCCGcUGAUCGCGUUCu -3'
miRNA:   3'- -GGuUGGuCAGC-UGGC-ACUAGUGCAGG- -5'
28111 5' -51.8 NC_005887.1 + 14699 0.66 0.846396
Target:  5'- aCCGcGCCGG-CuGCCGUGAgCGCGcCCu -3'
miRNA:   3'- -GGU-UGGUCaGcUGGCACUaGUGCaGG- -5'
28111 5' -51.8 NC_005887.1 + 14885 0.67 0.828368
Target:  5'- cCCGccAUCAGcgucgCGGCCGccagauUGAUCGgGUCCa -3'
miRNA:   3'- -GGU--UGGUCa----GCUGGC------ACUAGUgCAGG- -5'
28111 5' -51.8 NC_005887.1 + 15748 0.67 0.828368
Target:  5'- uCCGGCCGcgCGGCgGUGAgCugGUCg -3'
miRNA:   3'- -GGUUGGUcaGCUGgCACUaGugCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.