Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28111 | 5' | -51.8 | NC_005887.1 | + | 29708 | 0.67 | 0.837494 |
Target: 5'- gCAGCCAcUCG-CCGUcgcgucgcagGAUCACGcgCCg -3' miRNA: 3'- gGUUGGUcAGCuGGCA----------CUAGUGCa-GG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 36242 | 0.68 | 0.748536 |
Target: 5'- aCCAcuucGCCAGcucgugcgCGGCCGUGccuuCGUCCg -3' miRNA: 3'- -GGU----UGGUCa-------GCUGGCACuaguGCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 25111 | 0.68 | 0.748536 |
Target: 5'- gCGACCGGUugucCGGCCGaGAUCcaGCG-CCg -3' miRNA: 3'- gGUUGGUCA----GCUGGCaCUAG--UGCaGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 10907 | 0.68 | 0.779724 |
Target: 5'- gCAGCCGgcgcagaugacGUCGGCCGgccUGcUCACGcCCg -3' miRNA: 3'- gGUUGGU-----------CAGCUGGC---ACuAGUGCaGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 27122 | 0.68 | 0.779724 |
Target: 5'- uUCAGCUucGUCGACuCGUcggcGAUCACGcggCCg -3' miRNA: 3'- -GGUUGGu-CAGCUG-GCA----CUAGUGCa--GG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 7286 | 0.68 | 0.789818 |
Target: 5'- cCCGGCCgcccgcugugGGUCG-UCGUG-UCGcCGUCCg -3' miRNA: 3'- -GGUUGG----------UCAGCuGGCACuAGU-GCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 31339 | 0.68 | 0.789818 |
Target: 5'- gCCGACCGGgcCG-UCGUcGAUggccCACGUCCa -3' miRNA: 3'- -GGUUGGUCa-GCuGGCA-CUA----GUGCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 41615 | 0.67 | 0.819026 |
Target: 5'- gCGGCCGGcgCGGcCCGUGAggaUCugcuGCGUCUg -3' miRNA: 3'- gGUUGGUCa-GCU-GGCACU---AG----UGCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 36507 | 0.67 | 0.83478 |
Target: 5'- aCCGugCGGUCGACCGcagcaucgGGcggcggcagguauuUCGCGaauUCCg -3' miRNA: 3'- -GGUugGUCAGCUGGCa-------CU--------------AGUGC---AGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 41771 | 0.69 | 0.737877 |
Target: 5'- aCGAUCgaGGUCGuGCCGacgugGGUCGCGUUCa -3' miRNA: 3'- gGUUGG--UCAGC-UGGCa----CUAGUGCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 36394 | 0.69 | 0.694256 |
Target: 5'- aCGGCCg--CGAUgGUGGUCugGUUCa -3' miRNA: 3'- gGUUGGucaGCUGgCACUAGugCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 3613 | 0.7 | 0.680939 |
Target: 5'- --cGCCAGgccgcgcagcgcuUCGGCCGUGAaaaccugUCGcCGUCCa -3' miRNA: 3'- gguUGGUC-------------AGCUGGCACU-------AGU-GCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 31300 | 0.78 | 0.25241 |
Target: 5'- cUCGACCGGcaucggCGcACCgGUGGUCACGUCCc -3' miRNA: 3'- -GGUUGGUCa-----GC-UGG-CACUAGUGCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 39386 | 0.74 | 0.444079 |
Target: 5'- aCCGagGCCGGcggCGcaACCGUGGUCGCGaCCg -3' miRNA: 3'- -GGU--UGGUCa--GC--UGGCACUAGUGCaGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 4789 | 0.73 | 0.505976 |
Target: 5'- gCCAGCCGGcgaGGCCGUGcUCGCGg-- -3' miRNA: 3'- -GGUUGGUCag-CUGGCACuAGUGCagg -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 30758 | 0.72 | 0.538289 |
Target: 5'- gUCggUCAGcUCGACCGUGcgCGCGgcgaguUCCu -3' miRNA: 3'- -GGuuGGUC-AGCUGGCACuaGUGC------AGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 9895 | 0.72 | 0.54922 |
Target: 5'- uCCAGCCggugcaGGUCGGCgGcacGAUCAUGUUCg -3' miRNA: 3'- -GGUUGG------UCAGCUGgCa--CUAGUGCAGG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 26766 | 0.71 | 0.58239 |
Target: 5'- uCgAACCAGUCGGCCG-GGUCGagcgagauCGUgCa -3' miRNA: 3'- -GgUUGGUCAGCUGGCaCUAGU--------GCAgG- -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 34624 | 0.71 | 0.615945 |
Target: 5'- gCCAGCCAuUCG-CCGU--UCGCGUCg -3' miRNA: 3'- -GGUUGGUcAGCuGGCAcuAGUGCAGg -5' |
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28111 | 5' | -51.8 | NC_005887.1 | + | 28672 | 0.71 | 0.627173 |
Target: 5'- aCCAuucGCCAGaCGAcaacCCGcGAUCACGcCCg -3' miRNA: 3'- -GGU---UGGUCaGCU----GGCaCUAGUGCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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