miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 3' -54.7 NC_005887.1 + 41575 0.75 0.197279
Target:  5'- cGCCGAgacguuccugucGGCCAGCGGcggcccAGGUGCGGCGGc -3'
miRNA:   3'- -UGGCU------------UCGGUUGCU------UCCGUGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 40781 0.73 0.273202
Target:  5'- cGCCG-AGCCGGCGGucgAGGUucgugGCGGCGAc -3'
miRNA:   3'- -UGGCuUCGGUUGCU---UCCG-----UGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 40469 0.68 0.479162
Target:  5'- uGCCGgcGUCGACGAgcucgauuacgAGGCGUGGCGc- -3'
miRNA:   3'- -UGGCuuCGGUUGCU-----------UCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 37240 0.66 0.612198
Target:  5'- cGCCG-AGCCGACGcAGGagaacgugaaGCGGCu-- -3'
miRNA:   3'- -UGGCuUCGGUUGCuUCCg---------UGCCGuua -5'
28112 3' -54.7 NC_005887.1 + 37127 0.67 0.566775
Target:  5'- -aCGccGUCAGCGAgaAGGC-CGGCAAg -3'
miRNA:   3'- ugGCuuCGGUUGCU--UCCGuGCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 37089 0.68 0.479162
Target:  5'- cACCGAAGCgGGCGAGcacaGCcuCGGCGAUc -3'
miRNA:   3'- -UGGCUUCGgUUGCUUc---CGu-GCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 36820 0.66 0.623625
Target:  5'- cCCGAAGCUu-CGGAGGCA--GCAGUu -3'
miRNA:   3'- uGGCUUCGGuuGCUUCCGUgcCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 36331 0.73 0.252255
Target:  5'- -gCGAGuacGCgGACGAAGGCACGGCc-- -3'
miRNA:   3'- ugGCUU---CGgUUGCUUCCGUGCCGuua -5'
28112 3' -54.7 NC_005887.1 + 36170 0.66 0.635061
Target:  5'- uUCGAAGUCGACGAGGaaAUGGCc-- -3'
miRNA:   3'- uGGCUUCGGUUGCUUCcgUGCCGuua -5'
28112 3' -54.7 NC_005887.1 + 35964 0.69 0.448013
Target:  5'- gAUCGAAGUgcGCGAccugaaguacGGGCGCGGCGu- -3'
miRNA:   3'- -UGGCUUCGguUGCU----------UCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 35395 0.67 0.566775
Target:  5'- gGCCG--GCCGcCGcGGcGCGCGGCAGUg -3'
miRNA:   3'- -UGGCuuCGGUuGCuUC-CGUGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 34907 0.66 0.646493
Target:  5'- gUCGGuuGCCGuCGAAGGUugGGCc-- -3'
miRNA:   3'- uGGCUu-CGGUuGCUUCCGugCCGuua -5'
28112 3' -54.7 NC_005887.1 + 34405 0.66 0.612198
Target:  5'- aGCCGuGGCCGGCGc---CACGGCAc- -3'
miRNA:   3'- -UGGCuUCGGUUGCuuccGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 32415 0.67 0.589409
Target:  5'- gUCGAcguGGCCGGCGGcgauguGGCcgGCGGCGAUc -3'
miRNA:   3'- uGGCU---UCGGUUGCUu-----CCG--UGCCGUUA- -5'
28112 3' -54.7 NC_005887.1 + 32339 0.74 0.232647
Target:  5'- cGCCGAuGCCGGCGAAGaaAUGGCAc- -3'
miRNA:   3'- -UGGCUuCGGUUGCUUCcgUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 31907 0.7 0.38928
Target:  5'- gUCGAAGCCGuauuCGGaacgGGGCGgCGGCAAg -3'
miRNA:   3'- uGGCUUCGGUu---GCU----UCCGU-GCCGUUa -5'
28112 3' -54.7 NC_005887.1 + 30415 0.73 0.261861
Target:  5'- cGCCGAguucgcccaccaucaGGCCGACGucgGGGCGgGGCAu- -3'
miRNA:   3'- -UGGCU---------------UCGGUUGCu--UCCGUgCCGUua -5'
28112 3' -54.7 NC_005887.1 + 28519 0.66 0.635061
Target:  5'- cCCGGcaacaAGCCGACGAAGGguCaGCu-- -3'
miRNA:   3'- uGGCU-----UCGGUUGCUUCCguGcCGuua -5'
28112 3' -54.7 NC_005887.1 + 28321 0.67 0.582599
Target:  5'- uGCUgGAAGCCuguugucggcgucuGCGccGGCGCGGCAu- -3'
miRNA:   3'- -UGG-CUUCGGu-------------UGCuuCCGUGCCGUua -5'
28112 3' -54.7 NC_005887.1 + 28039 0.7 0.38928
Target:  5'- gGCCcGAGCCGGCGgcGGCAaGaGCGAUa -3'
miRNA:   3'- -UGGcUUCGGUUGCuuCCGUgC-CGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.