miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28112 5' -58.7 NC_005887.1 + 5071 1.11 0.000235
Target:  5'- aAGAUCAGCCCGCAUACCCGUGCGGGCu -3'
miRNA:   3'- -UCUAGUCGGGCGUAUGGGCACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 13584 0.82 0.033762
Target:  5'- cGAUCguGGCgCGCAUGCCCGUGCcGGCg -3'
miRNA:   3'- uCUAG--UCGgGCGUAUGGGCACGcCCG- -5'
28112 5' -58.7 NC_005887.1 + 26549 0.79 0.062263
Target:  5'- aGGAagCGGCCgGCAUGCCCGUGCucguGGCc -3'
miRNA:   3'- -UCUa-GUCGGgCGUAUGGGCACGc---CCG- -5'
28112 5' -58.7 NC_005887.1 + 32878 0.78 0.069878
Target:  5'- -cGUCGGCCCGCuguucGUGCCCGUgaaGCGGcGCg -3'
miRNA:   3'- ucUAGUCGGGCG-----UAUGGGCA---CGCC-CG- -5'
28112 5' -58.7 NC_005887.1 + 21379 0.74 0.126801
Target:  5'- cGGUCGGCgCgguggGCGUGCCCGUgaauGUGGGCg -3'
miRNA:   3'- uCUAGUCGgG-----CGUAUGGGCA----CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 4146 0.71 0.21834
Target:  5'- cGAUCugcGCCUGCuUGCCCGUGagcaGcGGCu -3'
miRNA:   3'- uCUAGu--CGGGCGuAUGGGCACg---C-CCG- -5'
28112 5' -58.7 NC_005887.1 + 18320 0.71 0.236173
Target:  5'- --uUCAGCUCGCccgugacgGUGCCCG-GCGuGGCc -3'
miRNA:   3'- ucuAGUCGGGCG--------UAUGGGCaCGC-CCG- -5'
28112 5' -58.7 NC_005887.1 + 18974 0.7 0.255211
Target:  5'- cGGUgAGCgCUGCGggcUGCCgGUGCcGGGCg -3'
miRNA:   3'- uCUAgUCG-GGCGU---AUGGgCACG-CCCG- -5'
28112 5' -58.7 NC_005887.1 + 30363 0.7 0.261832
Target:  5'- uGAUCGGCCUgacuGCGaACgUCGUGCGcGGCa -3'
miRNA:   3'- uCUAGUCGGG----CGUaUG-GGCACGC-CCG- -5'
28112 5' -58.7 NC_005887.1 + 27020 0.7 0.275491
Target:  5'- cGAaCGGCCUGCAggAUCUGUG-GGGCc -3'
miRNA:   3'- uCUaGUCGGGCGUa-UGGGCACgCCCG- -5'
28112 5' -58.7 NC_005887.1 + 16322 0.69 0.282531
Target:  5'- -cAUCAGCUCgGCgacgGUGCCCGUGCGcucgccggccGGCg -3'
miRNA:   3'- ucUAGUCGGG-CG----UAUGGGCACGC----------CCG- -5'
28112 5' -58.7 NC_005887.1 + 7279 0.69 0.297039
Target:  5'- -cAUCGGCCC-CGgccGCCCGcUGUGGGUc -3'
miRNA:   3'- ucUAGUCGGGcGUa--UGGGC-ACGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 15445 0.69 0.304506
Target:  5'- cGAUCAGCgCgGCGUcgACCUGcuCGGGCg -3'
miRNA:   3'- uCUAGUCG-GgCGUA--UGGGCacGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 39651 0.69 0.304506
Target:  5'- --uUCGGCCCGUGUuaggucuuACCUGacacuuuagGCGGGCa -3'
miRNA:   3'- ucuAGUCGGGCGUA--------UGGGCa--------CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 40484 0.68 0.325385
Target:  5'- uGAUCAGCUCGaGUucgaccggcacgucGgCCGUGCcGGGCa -3'
miRNA:   3'- uCUAGUCGGGCgUA--------------UgGGCACG-CCCG- -5'
28112 5' -58.7 NC_005887.1 + 26073 0.68 0.32777
Target:  5'- uGGUCAGCgCGuCAgcgGCCCGcGCGGcGUu -3'
miRNA:   3'- uCUAGUCGgGC-GUa--UGGGCaCGCC-CG- -5'
28112 5' -58.7 NC_005887.1 + 30760 0.68 0.32777
Target:  5'- cGGUCAGCUCGa----CCGUGCGcgcGGCg -3'
miRNA:   3'- uCUAGUCGGGCguaugGGCACGC---CCG- -5'
28112 5' -58.7 NC_005887.1 + 2324 0.68 0.32777
Target:  5'- gAGGUC-GCUgGCAUcuauggcgAUCCG-GCGGGCg -3'
miRNA:   3'- -UCUAGuCGGgCGUA--------UGGGCaCGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 32124 0.68 0.335811
Target:  5'- uGGGUguGuCCCGUu--UCCGUcuGCGGGCg -3'
miRNA:   3'- -UCUAguC-GGGCGuauGGGCA--CGCCCG- -5'
28112 5' -58.7 NC_005887.1 + 5149 0.68 0.335811
Target:  5'- uAGAUCgacAGCCCGCAcgGgUa-UGCGGGCu -3'
miRNA:   3'- -UCUAG---UCGGGCGUa-UgGgcACGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.